Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

53026273 .. 53027539

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGTGGTAAATGTGTATGAGATACCCACCACTACACTAGAATTTCCCATACCAGTGGGAGCAGAAGTGCTTACACGTAAATTTGAAGAAATGGATGACCTGAACACCAAGGAAGATCGGTATAGGCTAATTTCTTTTCATCAATTGTTAAAAAAAGTTAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

55

Amino Acids

6.5

Weight (kDa)

5.19

Isoelectric Point (pI)

20.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	41, 80
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	41, 80
BfaI	CTAG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse1I	ACTGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	60
CviJI	RGCY	1 cut(s)	127
CviKI_1	RGCY	1 cut(s)	127
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	5 cut(s)	18, 50, 123, 164, 166
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	2 cut(s)	66, 113
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	76
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	98, 125
MfeI	CAATTG	1 cut(s)	143
MluCI	AATT	4 cut(s)	41, 80, 129, 143
MseI	TTAA	2 cut(s)	149, 159
MslI	CAYNNNNRTG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	143
NdeII	GATC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	149, 159
Sau3AI	GATC	1 cut(s)	115
SetI	ASST	2 cut(s)	79, 102
SgeI	CNNG	5 cut(s)	50, 65, 87, 112, 121
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	41, 80, 129, 143
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	79
TasI	AATT	4 cut(s)	41, 80, 129, 143
Tru1I	TTAA	2 cut(s)	149, 159
Tru9I	TTAA	2 cut(s)	149, 159
TscAI	CASTG	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	2 cut(s)	41, 80
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.