RchiOBHm_Chr6g0290211

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
53311652 .. 53311995
344 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 180 bp
ATGTGGGATGTATATATCCTCAACACTTTCCTATTTGAAGCCTTGCATTGTCTGGTTGTCTATGCACTCATTCAGGCATTTTTCCCTCTTGGTAAGATCTATGTGATGATATTTGGAGCCTCTGTTTGGGTTTTAATTAGGAGGAGAAACTGTAAATCCCACAATCTATACCACCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

7.03

Weight (kDa)

9.18

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 38
BglII AGATCT 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 108, 136, 138, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 126
Bsp143I GATC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 118
BssMI GATC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 152
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BtsCI GGATG 1 cut(s) 13
CviJI RGCY 2 cut(s) 41, 119
CviKI_1 RGCY 2 cut(s) 41, 119
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
FaiI YATR 5 cut(s) 13, 15, 63, 102, 169
FokI GGATG 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 46, 65
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 38, 59
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MflI RGATCY 1 cut(s) 96
MluCI AATT 1 cut(s) 135
MnlI CCTC 4 cut(s) 29, 96, 130, 135
MseI TTAA 1 cut(s) 134
NdeII GATC 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 96
SaqAI TTAA 1 cut(s) 134
Sau3AI GATC 1 cut(s) 96
SgeI CNNG 4 cut(s) 55, 65, 86, 101
Sse9I AATT 1 cut(s) 135
TaaI ACNGT 1 cut(s) 152
TasI AATT 1 cut(s) 135
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.