Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

53606483 .. 53608627

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTATGTGAAAATAGATCTGTTTGAGCAAAATAATTACTCTACCTTGTGGTTCTTTGACAGTGGGGGTTGTGCGGTGTATTTGGTGGAAAATTCTGGTGGGTCACTTCATAAGGATTCCATAAGAGCCATTCGGTACAGAGCAAGTGGGAAGCTTTTTGTGTCTGCTGGTGATGATAAACTTGTCAAGATATGGTCAACTGAATCTTGGCGCTGCATTAGTACCATCTGCTCAGAGAAAAGAGTGACTTCAGTTGCCATAAGCAACGATGGTTCCTATGTTTGTTTTGCTGACAAATTTGGGGTTGTGGATGTGGATGTAGAGGGCTTTGACGGAAACCAAGTGTTTGCTGACAAAAAGGCAGCACCTATGCTTTCTCACTATTGTAGCATCATCACAAGCCTGGAGTTTTCTCCTGATGGACGATTTTTTATCAGTGCTTATCGGGATTTCAAAATTCGTGTTAATGTGTTTCCCAAGAAGCCTTTAGATGGAGCCCATGAGATACAAAGTTTTGCCCTTGGTCATACAGAATTTGTTTCTTGCCTTGCCTTTGTTTGCACTCAGGAGTTCCCCCAGGGTTTTCTTGTCTCTGGAAGTGGTGATTCAACTGTTCGCCTATGGGATATTTCCTCAGGATCTCTTTTAGATACTTGTGATATTAGAGAAAAGGCAGGACCTTTAGAGTTTAAAGGAATAGAAGAGGAGTGCTGTGCAGCTGTTACTGATTTATGCACCATCCCAGATAGTACACTTGTTGCAGTGGCTGTACAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043527 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

259

Amino Acids

28.54

Weight (kDa)

4.98

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	35 - 161	2.3e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	36 - 105	3.5e-11	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	36 - 96	1.1e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	36 - 225	2.1e-15	WDHD1 first WD40 domain
WD40_Prp19	PF24814	36 - 154	8.1e-08	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	36 - 230	2e-12	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	37 - 95	1.9e-07	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	37 - 97	2.2e-06	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	46 - 185	3.9e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	50 - 216	1.1e-09	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	80 - 219	2.5e-09	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	128 - 218	3e-09	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	132 - 224	1.3e-09	THOC3 beta-propeller domain
WD40	PF00400	175 - 209	3.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	646
AcsI	RAATTY	4 cut(s)	91, 296, 456, 533
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	137, 223, 751, 771
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	454, 609
AjnI	CCWGG	2 cut(s)	402, 576
AluBI	AGCT	2 cut(s)	154, 719
AluI	AGCT	2 cut(s)	154, 719
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	767
ApeKI	GCWGC	3 cut(s)	213, 362, 716
ApoI	RAATTY	4 cut(s)	91, 296, 456, 533
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	182, 614
AvaII	GGWCC	1 cut(s)	677
AxyI	CCTNAGG	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	200, 374, 728
BccI	CCATC	5 cut(s)	233, 263, 413, 485, 746
BciT130I	CCWGG	2 cut(s)	404, 578
BcoDI	GTCTC	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	214
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	214, 363, 717
BlsI	GCNGC	3 cut(s)	215, 364, 718
Bme1390I	CCNGG	2 cut(s)	404, 578
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	2 cut(s)	274, 496
BmrFI	CCNGG	2 cut(s)	404, 578
BmsI	GCATC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	520, 576, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse21I	CCTNAGG	1 cut(s)	634
BseBI	CCWGG	2 cut(s)	404, 578
BseDI	CCNNGG	3 cut(s)	520, 576, 577
BseGI	GGATG	3 cut(s)	316, 322, 738
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	3 cut(s)	246, 578, 648
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	3 cut(s)	200, 374, 728
BsgI	GTGCAG	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	2 cut(s)	16, 638
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	245, 577, 647
BspLI	GGNNCC	2 cut(s)	274, 496
BspPI	GGATC	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	520, 576, 577
BssMI	GATC	2 cut(s)	16, 638
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	404, 578
Bst4CI	ACNGT	2 cut(s)	62, 613
Bst6I	CTCTTC	1 cut(s)	696
BstAUI	TGTACA	1 cut(s)	769
BstDEI	CTNAG	3 cut(s)	232, 564, 634
BstF5I	GGATG	3 cut(s)	316, 322, 738
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	19, 641
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	2 cut(s)	16, 638
BstNI	CCWGG	2 cut(s)	404, 578
BstSCI	CCNGG	2 cut(s)	402, 576
BstV1I	GCAGC	3 cut(s)	200, 374, 728
BstX2I	RGATCY	2 cut(s)	16, 638
BstYI	RGATCY	2 cut(s)	16, 638
Bsu36I	CCTNAGG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	316, 322, 738
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	67, 442, 768
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	677
Csp6I	GTAC	4 cut(s)	136, 222, 750, 770
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	8 cut(s)	128, 154, 327, 402, 484, 497, 719, 767
CviKI_1	RGCY	8 cut(s)	128, 154, 327, 402, 484, 497, 719, 767
CviQI	GTAC	4 cut(s)	136, 222, 750, 770
DdeI	CTNAG	3 cut(s)	232, 564, 634
DpnI	GATC	2 cut(s)	18, 640
DpnII	GATC	2 cut(s)	16, 638
DraI	TTTAAA	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	402, 576
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	1 cut(s)	503
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	214, 363, 717
FokI	GGATG	3 cut(s)	323, 329, 725
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	3 cut(s)	214, 363, 717
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	214, 363, 717
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	214
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	116, 203, 605
HphI	GGTGA	2 cut(s)	182, 614
Hpy166II	GTNNAC	2 cut(s)	198, 752
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	6 cut(s)	187, 416, 446, 566, 594, 636
Hpy8I	GTNNAC	2 cut(s)	198, 752
HpyCH4III	ACNGT	2 cut(s)	62, 613
HpyCH4V	TGCA	5 cut(s)	216, 561, 716, 735, 761
HpyF3I	CTNAG	3 cut(s)	232, 564, 634
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	16, 638
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	3 cut(s)	200, 374, 728
LweI	GCATC	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	102, 244, 721
MalI	GATC	2 cut(s)	18, 640
MboI	GATC	2 cut(s)	16, 638
MboII	GAAGA	1 cut(s)	713
MflI	RGATCY	2 cut(s)	16, 638
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	5 cut(s)	34, 91, 296, 456, 533
MnlI	CCTC	3 cut(s)	316, 643, 697
MseI	TTAA	2 cut(s)	465, 690
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	404, 578
MvaI	CCWGG	2 cut(s)	404, 578
NdeII	GATC	2 cut(s)	16, 638
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	2 cut(s)	274, 496
NmuCI	GTSAC	2 cut(s)	102, 244
PasI	CCCWGGG	1 cut(s)	577
PfeI	GAWTC	3 cut(s)	116, 203, 605
PkrI	GCNGC	3 cut(s)	215, 364, 718
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	2 cut(s)	402, 576
PspGI	CCWGG	2 cut(s)	402, 576
PspN4I	GGNNCC	2 cut(s)	274, 496
PspPI	GGNCC	1 cut(s)	677
PspPPI	RGGWCCY	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	16, 638
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	4 cut(s)	137, 223, 751, 771
RsaNI	GTAC	4 cut(s)	136, 222, 750, 770
SaqAI	TTAA	2 cut(s)	465, 690
SatI	GCNGC	3 cut(s)	214, 363, 717
Sau3AI	GATC	2 cut(s)	16, 638
Sau96I	GGNCC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	404, 578
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	6 cut(s)	47, 156, 370, 682, 721, 779
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	677
Sse9I	AATT	5 cut(s)	34, 91, 296, 456, 533
SsiI	CCGC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	402, 576
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	62, 613
TasI	AATT	5 cut(s)	34, 91, 296, 456, 533
TatI	WGTACW	2 cut(s)	749, 769
TfiI	GAWTC	3 cut(s)	116, 203, 605
Tru1I	TTAA	2 cut(s)	465, 690
Tru9I	TTAA	2 cut(s)	465, 690
TscAI	CASTG	3 cut(s)	67, 442, 768
TseFI	GTSAC	2 cut(s)	102, 244
TseI	GCWGC	3 cut(s)	213, 362, 716
Tsp45I	GTSAC	2 cut(s)	102, 244
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	67, 442, 768
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	4 cut(s)	91, 296, 456, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.