RchiOBHm_Chr6g0290611

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
53664957 .. 53665765
809 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGGATTACGCCACTAAAACAAGTTTGGACCCATTCTTCTACTTCATTACCCAGTTCCTGAAGGCAGGACCTTTAAAGGAATACAAGAGGAGTGCTGTGCAGCTGTTACTGATTTGTGCAACATCCCAGATAGTACGTACACTTGTTGCAGTGGCTATACAAAGTTTGCAAGGGATTATATTCTTGAGATGGGATCTTTCTGCTCAAACACTCAATTTTGCCAAGATTATCATGAATATGGCTACAGGGAGCTGA

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

9.58

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 2 cut(s) 135, 139
AluBI AGCT 2 cut(s) 103, 252
AluI AGCT 2 cut(s) 103, 252
AlwI GGATC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 28, 68
AvaII GGWCC 2 cut(s) 28, 68
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme18I GGWCC 2 cut(s) 28, 68
BmgT120I GGNCC 2 cut(s) 28, 68
BmiI GGNNCC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 193
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 52
BssMI GATC 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 137
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 28, 68
Csp6I GTAC 2 cut(s) 134, 138
CviAII CATG 1 cut(s) 232
CviJI RGCY 4 cut(s) 103, 155, 242, 252
CviKI_1 RGCY 4 cut(s) 103, 155, 242, 252
CviQI GTAC 2 cut(s) 134, 138
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 28, 68
Eco57I CTGAAG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 68
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 158, 179, 233, 239
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 58, 184, 232
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 100, 119, 149, 169
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 51, 65, 71, 140, 231
Lsp1109I GCAGC 1 cut(s) 112
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 214
MnlI CCTC 1 cut(s) 81
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 103
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 30
PagI TCATGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 102
Ppu21I YACGTR 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 28, 68
PspPPI RGGWCCY 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 135, 139
RsaNI GTAC 2 cut(s) 134, 138
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 28, 68
SetI ASST 4 cut(s) 73, 105, 139, 254
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 2 cut(s) 28, 68
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SnaBI TACGTA 1 cut(s) 137
Sse9I AATT 1 cut(s) 214
TaiI ACGT 1 cut(s) 139
TasI AATT 1 cut(s) 214
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 34, 248
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 28, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.