Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030327

Physical Location & Seq

Genomic Coordinates Reverse (-)

53697948 .. 53700006

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGACAATTTGGGATACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTATAGAAGTGCCCAAGGAATCATTCTCGTTTATGATGTGACTCGGAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAATTATACTCAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

55

Amino Acids

6.47

Weight (kDa)

5.04

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	1 - 52	1.7e-18	Ras family
Arf	PF00025	1 - 40	5e-06	ADP-ribosylation factor family
Roc	PF08477	2 - 53	2.5e-14	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030327)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0290691
rosa_wichuraiana	Rw5G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	20, 51
AluI	AGCT	2 cut(s)	20, 51
Alw26I	GTCTC	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	7
CviJI	RGCY	3 cut(s)	20, 51, 137
CviKI_1	RGCY	3 cut(s)	20, 51, 137
Eco130I	CCWWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaiI	YATR	4 cut(s)	60, 90, 133, 154
HinfI	GANTC	2 cut(s)	75, 97
Hpy188I	TCNGA	3 cut(s)	38, 102, 127
LpnPI	CCDG	2 cut(s)	6, 11
MaeIII	GTNAC	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	6, 149, 163
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	44
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	22, 35, 53, 113
SfcI	CTRYAG	1 cut(s)	58
SgeI	CNNG	6 cut(s)	33, 38, 60, 83, 95, 111
Sse9I	AATT	3 cut(s)	6, 149, 163
StyI	CCWWGG	1 cut(s)	70
TasI	AATT	3 cut(s)	6, 149, 163
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.