RchiOBHm_Chr6g0291761

U3 small nucleolar RNA-associated protein 6 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
54790778 .. 54791138
361 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGAAGTGACATTCCTAAATAAACTAAAGGCTCAAAAGGTTGCTCTTGGAGAGGATGTGGGCACTCTGGACCGTACTCAGACACTTGCTGATCAGAAACAGTGGAGAGATGAGAATAAAGATCTATACATGCCCCTTAATCAAGAAACAGAAAACAATGAGGGTCAGATACTGAAAATCAGAAGTCAAGGAACAAAGTTAATAATTTTCAAGAGCAAGGTTTTAGCACACTACGAACCATATACATTGAAGCATTGCTTTTGGAGATCTCGGAAGCAACTTCCTTGGTTAGTTCAGAAGAAATACGTAAGGAATTACTATGTGACATGA

Protein Analysis

109

Amino Acids

13.05

Weight (kDa)

9.58

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022793)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291761
rosa_samantha Rh6AG334100 Rh6CG347300
rosa_wichuraiana Rw6G029090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 76
AgsI TTSAA 2 cut(s) 211, 250
AlwNI CAGNNNCTG 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 65
BclI TGATCA 1 cut(s) 91
BglII AGATCT 2 cut(s) 121, 266
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 91, 121, 266
BspCNI CTCAG 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 3 cut(s) 91, 121, 266
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 74, 102
BstBAI YACGTR 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 3 cut(s) 94, 124, 269
BstMBI GATC 3 cut(s) 91, 121, 266
BstNSI RCATGY 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 121, 266
BstYI RGATCY 2 cut(s) 121, 266
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 75
CviAII CATG 2 cut(s) 130, 327
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 93, 123, 268
DpnII GATC 3 cut(s) 91, 121, 266
Eco105I TACGTA 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 133, 330
FaiI YATR 6 cut(s) 127, 131, 241, 243, 321, 328
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 2 cut(s) 129, 326
FbaI TGATCA 1 cut(s) 91
FokI GGATG 1 cut(s) 68
Hin1II CATG 2 cut(s) 133, 330
Hpy188I TCNGA 6 cut(s) 81, 96, 168, 182, 273, 297
Hpy188III TCNNGA 3 cut(s) 68, 143, 211
HpyCH4III ACNGT 2 cut(s) 74, 102
HpyCH4IV ACGT 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 2 cut(s) 133, 330
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 121, 266
LpnPI CCDG 1 cut(s) 53
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 7, 322
MalI GATC 3 cut(s) 93, 123, 268
MboI GATC 3 cut(s) 91, 121, 266
MboII GAAGA 1 cut(s) 310
MflI RGATCY 2 cut(s) 121, 266
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 204, 313
MnlI CCTC 2 cut(s) 46, 154
MseI TTAA 2 cut(s) 138, 200
NdeII GATC 3 cut(s) 91, 121, 266
NlaIII CATG 2 cut(s) 133, 330
NmuCI GTSAC 2 cut(s) 7, 322
NspI RCATGY 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 307
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 121, 266
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 138, 200
Sau3AI GATC 3 cut(s) 91, 121, 266
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 42, 222, 309
SinI GGWCC 1 cut(s) 70
SnaBI TACGTA 1 cut(s) 307
Sse9I AATT 2 cut(s) 204, 313
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 74, 102
TaiI ACGT 1 cut(s) 309
TasI AATT 2 cut(s) 204, 313
Tru1I TTAA 2 cut(s) 138, 200
Tru9I TTAA 2 cut(s) 138, 200
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 2 cut(s) 7, 322
Tsp45I GTSAC 2 cut(s) 7, 322
TspRI CASTG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.