RchiOBHm_Chr6g0291831

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
54915542 .. 54916919
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGACAGAAAGAATCATGGGGAATCGGCGATTCATTCACTTCAAAAATCTGGTACTAAGCTTCCTCAGCTCCTGACACAGTTTTCTGCCAGTATCGCTGGACTAGGCTTGGCTGTCCTTTTATCTGTTGTCTTTAAAGTAGCTTGTGGGAGGGTAACCTTCTATGCATCTACACTTTTGAACACCGGGGTTGGGTTTGGGCTAGTTTGGCTATCTAGGGCAGTGCATGAGCTGAGGGACACTATCGTACCGCTATCAGCAAGAATTCAAGCAAGTTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.12

Weight (kDa)

10.17

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030309)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291831
rosa_samantha Rh6AG334500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 2 cut(s) 55, 249
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 3 cut(s) 44, 181, 269
AluBI AGCT 4 cut(s) 61, 70, 143, 232
AluI AGCT 4 cut(s) 61, 70, 143, 232
AlwNI CAGNNNCTG 1 cut(s) 73
ApoI RAATTY 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 187
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BbvCI CCTCAGC 2 cut(s) 66, 233
BcnI CCSGG 1 cut(s) 187
BfaI CTAG 3 cut(s) 104, 203, 216
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 176
Bpu10I CCTNAGC 2 cut(s) 66, 233
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 80, 224
BseNI ACTGG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 251
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 79, 225
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 57, 66, 233
BstEII GGTNACC 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 67, 95, 208
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 73
Csp6I GTAC 2 cut(s) 54, 248
CviAII CATG 2 cut(s) 17, 227
CviJI RGCY 8 cut(s) 61, 70, 108, 113, 143, 202, 211, 232
CviKI_1 RGCY 8 cut(s) 61, 70, 108, 113, 143, 202, 211, 232
CviQI GTAC 2 cut(s) 54, 248
DdeI CTNAG 3 cut(s) 57, 66, 233
DraI TTTAAA 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 2 cut(s) 20, 230
FaiI YATR 4 cut(s) 18, 165, 228, 283
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 16, 226
FspBI CTAG 3 cut(s) 104, 203, 216
HapII CCGG 1 cut(s) 186
Hin1II CATG 2 cut(s) 20, 230
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 3 cut(s) 13, 23, 31
HpaII CCGG 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 167, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 95, 208
HpyF3I CTNAG 3 cut(s) 57, 66, 233
Hsp92II CATG 2 cut(s) 20, 230
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 5 cut(s) 36, 84, 86, 103, 199
LweI GCATC 1 cut(s) 176
MaeI CTAG 3 cut(s) 104, 203, 216
MaeIII GTNAC 1 cut(s) 154
MluCI AATT 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 3 cut(s) 75, 144, 228
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 67, 95, 208
NciI CCSGG 1 cut(s) 187
NlaIII CATG 2 cut(s) 20, 230
NsiI ATGCAT 1 cut(s) 169
PfeI GAWTC 3 cut(s) 13, 23, 31
PspEI GGTNACC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 55, 249
RsaNI GTAC 2 cut(s) 54, 248
SaqAI TTAA 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 187
SetI ASST 5 cut(s) 63, 72, 145, 161, 234
SfaNI GCATC 1 cut(s) 176
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 251
SspMI CTAG 3 cut(s) 104, 203, 216
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 81
TasI AATT 1 cut(s) 264
TfiI GAWTC 3 cut(s) 13, 23, 31
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 264
XspI CTAG 3 cut(s) 104, 203, 216
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.