RchiOBHm_Chr6g0292411

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
55304909 .. 55305430
522 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGTTGGTTTTTGTAGCACTTTATGGGATTCTTGGGGATTGCCAAGGAGGCCAACGGAGGACGAATTTCTACAAGAAAACCTGTCTGGCTGAGGAAATTGTCAGAAATGTCACTTGGAACCATGTCACCACAAATCAGATCTTGCCAGCGAAGCTCCTCCGATTGCATTTCCATGACTGCTTTGTTAGGGTACTTGAGTTGTCATGCGCTTATTTTTACACTATGATTCAGACAGTAGAAATTAATTTACAGTGTGTGCATGATTTCCAGGGTTGTGATGGATCAGTGTTGCTGAATTCAATAGCAAACAACACGGCGGATCGGAGAAGGATGTGCTTCCGATGTTATTGA

Protein Analysis

116

Amino Acids

13.46

Weight (kDa)

8.47

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 34 - 103 4e-09 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AclWI GGATC 2 cut(s) 289, 327
AcsI RAATTY 2 cut(s) 64, 295
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 2 cut(s) 289, 327
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 2 cut(s) 64, 295
AseI ATTAAT 1 cut(s) 243
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 182, 215
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 48
BglII AGATCT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 43, 268
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 43, 268
BseGI GGATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 146
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 138, 281, 319
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 2 cut(s) 289, 327
BssECI CCNNGG 2 cut(s) 43, 268
BssMI GATC 3 cut(s) 138, 281, 319
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 235, 252
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 141, 284, 322
BstMBI GATC 3 cut(s) 138, 281, 319
BstMWI GCNNNNNNNGC 2 cut(s) 48, 151
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 257, 291
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 191
CviAII CATG 4 cut(s) 122, 173, 204, 260
CviJI RGCY 3 cut(s) 51, 89, 154
CviKI_1 RGCY 3 cut(s) 51, 89, 154
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 140, 283, 321
DpnII GATC 3 cut(s) 138, 281, 319
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 4 cut(s) 125, 176, 207, 263
FaiI YATR 6 cut(s) 24, 123, 174, 205, 224, 261
FatI CATG 4 cut(s) 121, 172, 203, 259
FokI GGATG 1 cut(s) 343
GlaI GCGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 1 cut(s) 209
Hin1II CATG 4 cut(s) 125, 176, 207, 263
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 28, 226
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 6 cut(s) 104, 138, 161, 231, 324, 341
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 235, 252
HpyCH4V TGCA 2 cut(s) 166, 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 151
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 4 cut(s) 125, 176, 207, 263
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 138, 281, 319
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 5 cut(s) 71, 94, 159, 254, 281
MaeIII GTNAC 2 cut(s) 109, 124
MalI GATC 3 cut(s) 140, 283, 321
MboI GATC 3 cut(s) 138, 281, 319
MflI RGATCY 1 cut(s) 138
MluCI AATT 5 cut(s) 64, 96, 240, 244, 295
MnlI CCTC 4 cut(s) 41, 51, 85, 167
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 48, 151
NdeII GATC 3 cut(s) 138, 281, 319
NlaIII CATG 4 cut(s) 125, 176, 207, 263
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 2 cut(s) 109, 124
PfeI GAWTC 2 cut(s) 28, 226
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 3 cut(s) 138, 281, 319
ScrFI CCNGG 1 cut(s) 269
SetI ASST 2 cut(s) 83, 156
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 64, 96, 240, 244, 295
SsiI CCGC 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 235, 252
TasI AATT 5 cut(s) 64, 96, 240, 244, 295
TfiI GAWTC 2 cut(s) 28, 226
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 257, 291
TseFI GTSAC 2 cut(s) 109, 124
Tsp45I GTSAC 2 cut(s) 109, 124
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 257, 291
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 2 cut(s) 64, 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.