RchiOBHm_Chr6g0293601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
56220076 .. 56220279
204 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGAGCCAAACAAGAATAGGTTCGTGGAGGAGTGGGGCGCAGCCAGAGAAAATCTGGAGCACAACTTCCGCTGGACTCGCCTCAACTTTGCCATCATCGGAATCTTTGGCATCGCTATCATCGTCTTAGTCTACAAGGGCATCGTCCGAGAATTCCATATGCAAGATGAGGAAGCAAGCAGACCATACAGGAAGTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

8.07

Weight (kDa)

8.18

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 152
Alw21I GWGCWC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 101
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 120, 150
BpmI CTGGAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 63
BspACI CCGC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 41
CviJI RGCY 2 cut(s) 7, 44
CviKI_1 RGCY 2 cut(s) 7, 44
DdeI CTNAG 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 152
FaiI YATR 3 cut(s) 159, 161, 187
FauNDI CATATG 1 cut(s) 159
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 77
HhaI GCGC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 2 cut(s) 76, 102
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 101, 149
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 127
HspAI GCGC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 4, 58
LpnPI CCDG 4 cut(s) 41, 58, 58, 175
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 120, 150
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 3 cut(s) 22, 92, 163
MroXI GAANNNNTTC 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeI CATATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 1 cut(s) 42
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 63
SetI ASST 1 cut(s) 23
SfaNI GCATC 2 cut(s) 120, 150
Sse9I AATT 1 cut(s) 152
SsiI CCGC 1 cut(s) 70
TasI AATT 1 cut(s) 152
TfiI GAWTC 1 cut(s) 102
TseI GCWGC 1 cut(s) 41
XapI RAATTY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.