RchiOBHm_Chr6g0296981

tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
58636895 .. 58637259
365 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGTTTCTCATATCGAATGTTTTTTTTCCAAAGGATGGGAAGTACAGCGAAGCATTGGGCAAACGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCGAAAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCTGTTAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

68

Amino Acids

7.58

Weight (kDa)

9.16

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 171
BauI CACGAG 1 cut(s) 107
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 75, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 40, 148
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 35
BsmI GAATGC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 40, 148
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 173
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 40, 148
Csp6I GTAC 1 cut(s) 43
CviJI RGCY 2 cut(s) 176, 190
CviKI_1 RGCY 2 cut(s) 176, 190
CviQI GTAC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 171
FaiI YATR 2 cut(s) 11, 80
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 47, 155
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 68
HpaI GTTAAC 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 109, 201
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 173
KspAI GTTAAC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 75, 133
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 173
NlaIV GGNNCC 1 cut(s) 189
PaeR7I CTCGAG 1 cut(s) 171
PctI GAATGC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 189
PspXI VCTCGAGB 1 cut(s) 171
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 165
SchI GAGTC 1 cut(s) 77
SetI ASST 2 cut(s) 178, 206
SfaNI GCATC 2 cut(s) 75, 133
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 171
SgeI CNNG 7 cut(s) 77, 119, 121, 134, 159, 183, 185
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 1 cut(s) 135
TaqI TCGA 2 cut(s) 14, 172
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.