RchiOBHm_Chr6g0297131

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
58825096 .. 58825792
697 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGGATTCGACCGCTTCACCGCCTCCCTATCATCACCATTCTCGTTCGGAGTCTCCGTTCCTAACCAAATCGGCGTCGCAACTTGCAAATCTTCAGCTTCACTCCCTCTGCACGAGCTACTGCTACTCTCGCCTTTGCCCAATCCAAGAACGTCCAAGACCCGTCTCGCCGATCGGTTTGAAATGCCCGATGAGTTTGGTCGCTTGTGTGCCCTCCCCAACTTCATCTACAATGGATGATGATGATGGGGGTCGTCTGGAGAGAATTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.82

Weight (kDa)

6.88

Isoelectric Point (pI)

89.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 20
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 74
AgsI TTSAA 1 cut(s) 181
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 97, 117
AluI AGCT 2 cut(s) 97, 117
Alw26I GTCTC 2 cut(s) 57, 169
AsuHPI GGTGA 2 cut(s) 9, 26
BaeGI GKGCMC 1 cut(s) 213
BauI CACGAG 1 cut(s) 112
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 57, 169
BsaHI GRCGYC 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
BseGI GGATG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 94
Bsh1285I CGRYCG 2 cut(s) 12, 174
BsiEI CGRYCG 2 cut(s) 12, 174
BsmAI GTCTC 2 cut(s) 57, 169
BsmBI CGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 2 cut(s) 12, 20
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 57, 169
BstMBI GATC 1 cut(s) 171
BstMCI CGRYCG 2 cut(s) 12, 174
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 241
CseI GACGC 1 cut(s) 63
CviJI RGCY 2 cut(s) 97, 117
CviKI_1 RGCY 2 cut(s) 97, 117
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 169
FokI GGATG 1 cut(s) 248
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 74
HinfI GANTC 2 cut(s) 5, 50
HphI GGTGA 2 cut(s) 9, 26
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 86, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 1 cut(s) 242
MaeII ACGT 1 cut(s) 151
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 3 cut(s) 33, 116, 223
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 1 cut(s) 5
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PvuI CGATCG 1 cut(s) 174
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 99, 119, 154
Sse9I AATT 1 cut(s) 264
SsiI CCGC 2 cut(s) 12, 20
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 264
TfiI GAWTC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.