RchiOBHm_Chr6g0299991

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
60939834 .. 60940628
795 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGTCTCCACTGGTCAGTCGCCGCTCTCTCTCTCATCAAAACCCTAACTTTTTCTGCTTGAAATTTTCTAAAATTCGTCGCCATTGTTGTGTCTATGTTGCGAATCTGTGCTCGGATAAAATCACTCAACTCACGGATAATGTCTATGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTTTCCTACTATGTGAGGCACTTTCTTCATCAGCACATGGGAGTCTTTTTCAGCCTCTGTGCCTTTTATTTCACTGATTCCATTCAACTATGGCAGCCTGCTACTGGGCTACTATCATATGGCAACAAGGCTTGGCATAATATGTTGCAAACTGGGTTGATTGTTGGAGGCTGGGACAAGTATGAGAAGGAAAGATGTCAAAATATTCAACTACTCTTCCTCTGCACTCGATTAAGATGTCAGGTATGGTTTCTGGTTCAACAGATGTATTTTTTTTGGAGAAAAGTTTATGATATTCGGGGCTTTACCTGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

19.52

Weight (kDa)

9.27

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 39 - 125 1.9e-06 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 62, 72
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 4 cut(s) 61, 269, 392, 443
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 167, 277
ApoI RAATTY 2 cut(s) 62, 72
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 154, 289
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 22, 168, 278
BlsI GCNGC 3 cut(s) 23, 169, 279
BmrI ACTGGG 2 cut(s) 297, 345
BmuI ACTGGG 2 cut(s) 297, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 15, 292, 340
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 3 cut(s) 15, 292, 340
BseXI GCAGC 2 cut(s) 154, 289
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 161
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 3 cut(s) 15, 292, 340
BssMI GATC 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 154, 289
BtsIMutI CAGTG 2 cut(s) 8, 255
Cac8I GCNNGC 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 240
CviAII CATG 1 cut(s) 220
CviJI RGCY 7 cut(s) 167, 237, 280, 292, 314, 354, 486
CviKI_1 RGCY 7 cut(s) 167, 237, 280, 292, 314, 354, 486
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
FaeI CATG 1 cut(s) 223
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 219
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 22, 168, 278
Fsp4HI GCNGC 3 cut(s) 22, 168, 278
GluI GCNGC 3 cut(s) 22, 168, 278
GsaI CCCAGC 1 cut(s) 358
Hin1II CATG 1 cut(s) 223
HinfI GANTC 4 cut(s) 103, 173, 225, 260
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 170, 331, 408
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 8 cut(s) 144, 164, 273, 294, 321, 340, 410, 422
Lsp1109I GCAGC 2 cut(s) 154, 289
MalI GATC 1 cut(s) 163
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 161
MboII GAAGA 2 cut(s) 200, 391
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 62, 72
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 192, 248, 344, 413
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 87
NdeI CATATG 1 cut(s) 301
NdeII GATC 1 cut(s) 161
NlaIII CATG 1 cut(s) 223
PfeI GAWTC 3 cut(s) 103, 173, 260
PkrI GCNGC 3 cut(s) 23, 169, 279
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 354
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 3 cut(s) 22, 168, 278
Sau3AI GATC 1 cut(s) 161
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 113
SetI ASST 3 cut(s) 183, 429, 494
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 2 cut(s) 62, 72
SsiI CCGC 1 cut(s) 22
SspI AATATT 1 cut(s) 388
TaqI TCGA 1 cut(s) 412
TasI AATT 2 cut(s) 62, 72
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 3 cut(s) 103, 173, 260
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 15, 262
TseI GCWGC 2 cut(s) 167, 277
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 15, 262
XapI RAATTY 2 cut(s) 62, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.