Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

61816134 .. 61818030

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCCAAGTTCTCGGTGAAGCCCCCCTATAAATTTAAGAATGTTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAATTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATCGTATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAAACCCCCAGAGATTGATAGAACATCCGGGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACATCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

5.46

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	12 - 85	7.6e-15	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	93 - 161	6.7e-18	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	32, 236, 327
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	278, 310
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	50, 175, 355, 428
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AoxI	GGCC	1 cut(s)	139
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	32, 236, 327
AspS9I	GGNCC	2 cut(s)	139, 140
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	28, 167
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	139, 140
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	148, 284, 394
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 310
Bse1I	ACTGG	2 cut(s)	91, 478
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	4 cut(s)	268, 299, 357, 409
BseLI	CCNNNNNNNGG	2 cut(s)	278, 310
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	91, 478
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	278, 310
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	141
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	91, 478
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	207, 413
BstF5I	GGATG	4 cut(s)	268, 299, 357, 409
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 294, 395, 404
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	268, 299, 357, 409
BtsIMutI	CAGTG	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	139, 140
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	2 cut(s)	199, 460
CviJI	RGCY	6 cut(s)	22, 53, 133, 141, 203, 364
CviKI_1	RGCY	6 cut(s)	22, 53, 133, 141, 203, 364
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	2 cut(s)	207, 413
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	2 cut(s)	202, 463
FaiI	YATR	7 cut(s)	30, 194, 200, 222, 321, 461, 471
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	2 cut(s)	198, 459
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	4 cut(s)	255, 306, 344, 416
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	2 cut(s)	202, 463
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	283, 345
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	28, 167
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	182, 414
Hpy188III	TCNNGA	2 cut(s)	58, 291
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 294, 395, 404
HpyF3I	CTNAG	2 cut(s)	207, 413
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	202, 463
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	104, 147, 266, 276, 285, 318, 374, 416, 459
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	3 cut(s)	148, 284, 394
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	166, 476
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	4 cut(s)	32, 147, 236, 327
MnlI	CCTC	2 cut(s)	111, 307
MseI	TTAA	3 cut(s)	36, 300, 441
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	209, 294, 395, 404
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	202, 463
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	283, 345
PkrI	GCNGC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	141
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	139, 140
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	36, 300, 441
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	139, 140
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	5 cut(s)	55, 103, 435, 439, 447
SfaNI	GCATC	3 cut(s)	148, 284, 394
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	32, 147, 236, 327
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	32, 147, 236, 327
TfiI	GAWTC	2 cut(s)	283, 345
Tru1I	TTAA	3 cut(s)	36, 300, 441
Tru9I	TTAA	3 cut(s)	36, 300, 441
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	3 cut(s)	32, 236, 327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.