Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

62527732 .. 62530017

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTGGCTCCTCAGCTATTTCTACCAAGGAAAAAGTGGGGTATTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTTTATTCAGAGCCAGGTGTCGGAATTAGAATCCAAAGAACTCGATCGCACCTTCTCCTTTTATTCTTCTCATGCTCTTCATATATATATATATATATATATATATATATATATATATATATATCTTTTTCTGCAGTTTTAAGCCTATGCATTGATGGTTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAATTGTGCCCTACAGTTTGGACACTTCCATAGGTACATGTGTGATAAAAGAAGAAATTGATTTGGAGCGACCTGACATATCAAGAACCTCTATTCTACCTGATGTGAGAGTATCTAACTGTCGCAAAGGAAATGCTTTGGCAATATTGAAGTATCACCTTGCAACGTGTAATGCAGTCTCTTATTCAACAGATTGTAAGCTAATGGCCTTTGCATCAGAGGACACCGTGGTGGCACTTTGGAAACTCTATACTCCTCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

179

Amino Acids

19.97

Weight (kDa)

8.64

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflIII	ACRYGT	2 cut(s)	311, 440
AgsI	TTSAA	2 cut(s)	424, 462
AjnI	CCWGG	2 cut(s)	52, 91
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	3 cut(s)	16, 263, 475
AluI	AGCT	3 cut(s)	16, 263, 475
Alw26I	GTCTC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	54, 93
BcoDI	GTCTC	1 cut(s)	457
BfmI	CTRYAG	3 cut(s)	210, 264, 286
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	54, 93
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	54, 93
BmsI	GCATC	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	26, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	54, 93
BseDI	CCNNGG	2 cut(s)	26, 501
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	26, 270
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	482
BsiEI	CGRYCG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	25, 269
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	2 cut(s)	214, 268
BspQI	GCTCTTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	26, 501
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	54, 93
Bst4CI	ACNGT	3 cut(s)	290, 395, 502
Bst6I	CTCTTC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	12, 256
BstDSI	CCRYGG	1 cut(s)	501
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	54, 93
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	52, 91
BstSFI	CTRYAG	3 cut(s)	210, 264, 286
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	150, 240, 312
CviJI	RGCY	7 cut(s)	8, 16, 91, 222, 263, 475, 482
CviKI_1	RGCY	7 cut(s)	8, 16, 91, 222, 263, 475, 482
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	12, 256
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	52, 91
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	153, 243, 315
FatI	CATG	3 cut(s)	149, 239, 311
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	153, 243, 315
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	88, 101, 493
Hpy188III	TCNNGA	2 cut(s)	258, 357
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	290, 395, 502
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	7 cut(s)	212, 228, 243, 266, 437, 449, 488
HpyF3I	CTNAG	2 cut(s)	12, 256
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	153, 243, 315
Kzo9I	GATC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	13, 260, 340
LpnPI	CCDG	8 cut(s)	39, 66, 75, 78, 105, 243, 360, 387
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	136, 147, 338
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	102, 276, 330
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	21, 373, 487, 540
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	54, 93
MvaI	CCWGG	2 cut(s)	54, 93
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	153, 243, 315
NlaIV	GGNNCC	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	315
OliI	CACNNNNGTG	1 cut(s)	503
PciI	ACATGT	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	265
Ple19I	CGATCG	1 cut(s)	125
PscI	ACATGT	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	52, 91
PspGI	CCWGG	2 cut(s)	52, 91
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	2 cut(s)	214, 268
PstNI	CAGNNNCTG	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	54, 93
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	497
SfcI	CTRYAG	3 cut(s)	210, 264, 286
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	102, 276, 330
SspI	AATATT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	52, 91
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	290, 395, 502
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	102, 276, 330
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	147, 228, 285
XceI	RCATGY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.