RchiOBHm_Chr6g0303021

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
62901820 .. 62902059
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGCCTAAAATGACTATTTTACCCCTCATTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTTTTCTCTCTTTTTTTTTCCCTACTTCTCTCGCCTCCGGCTCTGTAAAAACGAGCATCTCCACTTGTCCCACAAAGACTCCAGCAACAAAGCTATGGATTCTGCAAAGGTTGTCCGACCCGACAACGCGATCCAGAAGTGGACCCGAGAAACCACCGACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

9.65

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AclWI GGATC 1 cut(s) 202
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 221
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsh1236I CGCG 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 1 cut(s) 207
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 202
BssMI GATC 1 cut(s) 207
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstUI CGCG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 219
CviJI RGCY 2 cut(s) 118, 170
CviKI_1 RGCY 2 cut(s) 118, 170
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 222
FaiI YATR 1 cut(s) 173
FaqI GGGAC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 142
HapII CCGG 1 cut(s) 115
HinfI GANTC 2 cut(s) 155, 176
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 182
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 3 cut(s) 128, 172, 224
LweI GCATC 1 cut(s) 142
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 2 cut(s) 35, 122
MspI CCGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 206
NdeII GATC 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 176
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 149
SetI ASST 2 cut(s) 172, 189
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 219
Sse9I AATT 1 cut(s) 76
TasI AATT 1 cut(s) 76
TfiI GAWTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.