RchiOBHm_Chr6g0303171

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
62996031 .. 62996807
777 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGCCCTTTAAGTCAAATGCTGCTATCTGGTGGGCTCTTCTCGGTGCTTGTCGGCTTCATCGTGATTATAATTTAGCAGGATTTGCAGCAAGAAATTTGCTTGAATTAGATTTAGATGATTCTGGCAGTTATGTCCTTCTAGCTAATACATATTCAAATTGTGGACAACTAGAATTATTCATATATATTTTTTTTTTCGAGTGTTTATTACTATATTCACTGAGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.76

Weight (kDa)

5.0

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 20 - 56 2.9e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AcsI RAATTY 1 cut(s) 94
AgsI TTSAA 2 cut(s) 104, 156
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 20, 86
ApoI RAATTY 1 cut(s) 94
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 7, 98
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 140, 170
BisI GCNGC 2 cut(s) 21, 87
BlsI GCNGC 2 cut(s) 22, 88
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 7, 98
BsmAI GTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 7, 98
BtsIMutI CAGTG 1 cut(s) 218
CviJI RGCY 3 cut(s) 35, 55, 143
CviKI_1 RGCY 3 cut(s) 35, 55, 143
DdeI CTNAG 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 37
FaiI YATR 7 cut(s) 69, 132, 151, 182, 184, 186, 214
Fnu4HI GCNGC 2 cut(s) 21, 87
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 21, 87
FspBI CTAG 2 cut(s) 140, 170
GluI GCNGC 2 cut(s) 21, 87
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 221
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 3 cut(s) 13, 63, 108
Lsp1109I GCAGC 2 cut(s) 7, 98
MaeI CTAG 2 cut(s) 140, 170
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 5 cut(s) 70, 94, 104, 157, 173
MseI TTAA 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 22, 88
PsiI TTATAA 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 21, 87
SduI GDGCHC 1 cut(s) 37
SetI ASST 1 cut(s) 145
Sse9I AATT 5 cut(s) 70, 94, 104, 157, 173
SspMI CTAG 2 cut(s) 140, 170
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 70, 94, 104, 157, 173
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 225
TseI GCWGC 2 cut(s) 20, 86
TspDTI ATGAA 2 cut(s) 47, 169
TspRI CASTG 1 cut(s) 225
XapI RAATTY 1 cut(s) 94
XspI CTAG 2 cut(s) 140, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.