Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030308

Physical Location & Seq

Genomic Coordinates Forward (+)

63492874 .. 63495242

Gene Structure 2369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATCCAGAGGGCTACTCTCTTTGATTTTGCTATTACAAATACAATGATGCATGAGAATACAGTCTCATTCGTGACTTTAAACAAGGTGGGCGGCTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGATCTGATCCTCCTTTCAAGGTGGAGGGATTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGGTCATAATTGATGAATGTTATGATATGAACTGTATGATTAGCATAAGGTTGATATCACTGATGAGGATCAAAAGGAGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

99

Amino Acids

11.41

Weight (kDa)

9.14

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	16 - 69	3e-16	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0030308)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304001
rosa_samantha	Rh3DG242700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 106
AclWI	GGATC	3 cut(s)	155, 163, 290
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	155, 163, 290
ApeKI	GCWGC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	94, 104
BlsI	GCNGC	2 cut(s)	95, 105
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	39
BplI	GAGNNNNNCTC	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	196, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	196, 213
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	3, 155, 160, 282
BspACI	CCGC	2 cut(s)	93, 106
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	105
BspPI	GGATC	3 cut(s)	155, 163, 290
BssECI	CCNNGG	2 cut(s)	196, 213
BssMI	GATC	4 cut(s)	3, 155, 160, 282
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	64, 248
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	6, 158, 163, 285
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	3, 155, 160, 282
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	272
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	14, 96, 119, 190
CviKI_1	RGCY	4 cut(s)	14, 96, 119, 190
DpnI	GATC	4 cut(s)	5, 157, 162, 284
DpnII	GATC	4 cut(s)	3, 155, 160, 282
DraI	TTTAAA	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	54
FaeI	CATG	1 cut(s)	56
FaiI	YATR	7 cut(s)	54, 129, 221, 237, 242, 251, 260
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	94, 104
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	94, 104
GluI	GCNGC	2 cut(s)	94, 104
Hin1II	CATG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	7, 73
HpyCH4III	ACNGT	2 cut(s)	64, 248
HpyCH4V	TGCA	2 cut(s)	52, 103
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	3, 155, 160, 282
LpnPI	CCDG	3 cut(s)	20, 200, 227
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	4 cut(s)	5, 157, 162, 284
MboI	GATC	4 cut(s)	3, 155, 160, 282
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	5 cut(s)	3, 172, 174, 199, 273
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	3, 155, 160, 282
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	95, 105
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	94, 104
Sau3AI	GATC	4 cut(s)	3, 155, 160, 282
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	5 cut(s)	90, 177, 210, 219, 266
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	93, 106
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	64, 248
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	243, 257
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.