RchiOBHm_Chr6g0304591

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
63787886 .. 63788293
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGAGTTTTGTGGTTTGGGTTCTTGAACATCGAAAAAATAAGCATTTTCAGGGCTCTCCCTCACGTCAAGTTGAAACCAGTGTCTGGTTCTCCTTCTCAACCTTGGTTTTTTCAGAGACTGAAAGAGTACTTAGCAATTGGACAAAATTTGAGATGGCTTTATGGATATTTGCTGTACTCTTATTGACAGTAAGTTATACAGCCAGTCTAACATCAATATATATTATAAACTGTTGTAAAACGATAGTAAAAGAATTTGAGAGAGGGAGAGTTTAG

Protein Analysis

91

Amino Acids

10.69

Weight (kDa)

9.14

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan PF00060 1 - 86 1.5e-16 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 84
AcsI RAATTY 2 cut(s) 146, 254
AfaI GTAC 2 cut(s) 129, 177
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 26, 74
AjiI CACGTC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 110
AlwNI CAGNNNCTG 2 cut(s) 84, 119
ApoI RAATTY 2 cut(s) 146, 254
BanII GRGCYC 1 cut(s) 56
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 78, 204
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 78, 204
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 78, 204
BssECI CCNNGG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 190, 233
BstDEI CTNAG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 110
BtrI CACGTC 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 85
CaiI CAGNNNCTG 2 cut(s) 84, 119
Csp6I GTAC 2 cut(s) 128, 176
CviJI RGCY 3 cut(s) 54, 158, 203
CviKI_1 RGCY 3 cut(s) 54, 158, 203
CviQI GTAC 2 cut(s) 128, 176
DdeI CTNAG 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 5 cut(s) 163, 198, 220, 222, 227
FriOI GRGCYC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 190, 233
HpyCH4IV ACGT 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 64
LpnPI CCDG 4 cut(s) 35, 70, 91, 217
MaeII ACGT 1 cut(s) 64
MfeI CAATTG 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 3 cut(s) 136, 146, 254
MnlI CCTC 2 cut(s) 70, 257
MunI CAATTG 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 84
PsiI TTATAA 1 cut(s) 227
PstNI CAGNNNCTG 2 cut(s) 84, 119
RsaI GTAC 2 cut(s) 129, 177
RsaNI GTAC 2 cut(s) 128, 176
ScaI AGTACT 1 cut(s) 129
SduI GDGCHC 1 cut(s) 56
SetI ASST 2 cut(s) 67, 104
SgeI CNNG 8 cut(s) 35, 62, 75, 80, 90, 97, 115, 216
Sse9I AATT 3 cut(s) 136, 146, 254
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 190, 233
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 31
TasI AATT 3 cut(s) 136, 146, 254
TatI WGTACW 2 cut(s) 127, 175
TscAI CASTG 1 cut(s) 85
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 84
XapI RAATTY 2 cut(s) 146, 254
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.