RchiOBHm_Chr6g0304631

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
63838451 .. 63838805
355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 135 bp
ATGAACGGTGTCCCATACTGGCTCATCAAGAACTCTTGGGGACAAAGATGGGGTGATAATGGCTATTTTAAGACGGAGTATGGGAAGAACATGTGTGGTATTGCAACTTGTGCTTCGTACTCGATTGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

44

Amino Acids

4.98

Weight (kDa)

8.71

Isoelectric Point (pI)

5.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 2 - 41 4.8e-14 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 65
BccI CCATC 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 91
CviJI RGCY 2 cut(s) 22, 63
CviKI_1 RGCY 2 cut(s) 22, 63
CviQI GTAC 1 cut(s) 118
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 16, 81, 92
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 90
Hin1II CATG 1 cut(s) 94
HphI GGTGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 1 cut(s) 94
LpnPI CCDG 1 cut(s) 4
MboII GAAGA 1 cut(s) 97
MseI TTAA 2 cut(s) 69, 133
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 94
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PscI ACATGT 1 cut(s) 90
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 69, 133
SgeI CNNG 5 cut(s) 31, 40, 48, 103, 120
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 122
Tru1I TTAA 2 cut(s) 69, 133
Tru9I TTAA 2 cut(s) 69, 133
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.