RchiOBHm_Chr6g0307541

Eukaryotic protein of unknown function (DUF829)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
65865219 .. 65866387
1169 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGTGGGGATTTGGGGGTCGGTATTATTGGGGGAGAAAAGAGAGGAGGAGTGATGGAACTGAAGGGATAGTGGTTGTGTTTGCATGGATGTCCAGCGAAGAGAAGCATTTGAAGAGCTATGTGCAGCTCTACTCCTCTCTGGGATGGAACTCACTCGTCTGCCACTCTCAATTTCTCAATATGAACTTGGGACATCTTTTGTGCCTGAATGTTTCTTGCATTATGCAATCATTGCTCCATGCTGACAGTAGTTTAATAAGGGGGTGGATATTCTACGCCGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

11.06

Weight (kDa)

7.76

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 2 cut(s) 117, 127
AluI AGCT 2 cut(s) 117, 127
ApeKI GCWGC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 47, 138
BfaI CTAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 230
BseGI GGATG 2 cut(s) 93, 149
BseMI GCAATG 1 cut(s) 230
BseRI GAGGAG 3 cut(s) 58, 61, 124
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 93, 107
BstAPI GCANNNNNTGC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 93, 149
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 93, 149
CviAII CATG 2 cut(s) 84, 239
CviJI RGCY 2 cut(s) 117, 127
CviKI_1 RGCY 2 cut(s) 117, 127
Eam1104I CTCTTC 2 cut(s) 93, 107
EarI CTCTTC 2 cut(s) 93, 107
Eco57I CTGAAG 1 cut(s) 81
FaeI CATG 2 cut(s) 87, 242
FaiI YATR 5 cut(s) 85, 120, 182, 224, 240
FaqI GGGAC 1 cut(s) 204
FatI CATG 2 cut(s) 83, 238
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 2 cut(s) 100, 156
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 286
GluI GCNGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 87, 242
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 83, 124, 219, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 2 cut(s) 87, 242
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 106, 125, 218
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 1 cut(s) 286
MboII GAAGA 2 cut(s) 110, 124
MluCI AATT 1 cut(s) 170
MnlI CCTC 3 cut(s) 36, 39, 145
MseI TTAA 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIII CATG 2 cut(s) 87, 242
PciSI GCTCTTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 125
SetI ASST 2 cut(s) 119, 129
SgeI CNNG 8 cut(s) 96, 105, 152, 167, 199, 217, 228, 251
Sse9I AATT 1 cut(s) 170
SspMI CTAG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 248
TasI AATT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 197
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.