Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030381

Physical Location & Seq

Genomic Coordinates Reverse (-)

66405494 .. 66405853

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACCACAACGACAAACGGATTCGTGGATCGATTGATGCGTGGTTAAAGTCTCCGGTTGTATACCAATTGGGTCGGACTTTTGACCCGCAGAGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATGGAAATGAATTTGGAATGGGAAAAGCTGTGGCGCTACGAAGTGGGTATGCCAGCAAGTTCAGTGGCCAAGTGACGTCGTATCCGGGACGTGAAGCCGGAAGCATTGACTTGGAGGTGTGTCTTCTTCCGGAAGTAATGACAGCTCTTGAATCTGATATAGAGTTCATGGAAGCTGCCTCTGTACCAAGTTATGATTTGTCAAACTCAAACTGGTGTGATGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

119

Amino Acids

13.13

Weight (kDa)

4.7

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 100	4.2e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0030381)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0308311
rosa_samantha	Rh6AG475200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	221
AluBI	AGCT	3 cut(s)	158, 275, 305
AluI	AGCT	3 cut(s)	158, 275, 305
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	216
BmgBI	CACGTC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	206
BsaWI	WCCGGW	2 cut(s)	55, 259
Bse1I	ACTGG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	32
BsiSI	CCGG	4 cut(s)	56, 215, 228, 260
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	259
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	29
BssNAI	GTATAC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	2 cut(s)	127, 298
CviJI	RGCY	5 cut(s)	158, 198, 227, 275, 305
CviKI_1	RGCY	5 cut(s)	158, 198, 227, 275, 305
CviQI	GTAC	1 cut(s)	314
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	196
FaeI	CATG	2 cut(s)	130, 301
FaiI	YATR	7 cut(s)	64, 128, 132, 180, 290, 299, 324
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	126, 297
FauI	CCCGC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	4 cut(s)	56, 215, 228, 260
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	130, 301
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	3 cut(s)	22, 120, 281
HpaII	CCGG	4 cut(s)	56, 215, 228, 260
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	78, 117, 286
Hpy188III	TCNNGA	2 cut(s)	260, 278
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	206, 220
HpySE526I	ACGT	2 cut(s)	206, 220
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	130, 301
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	69, 196, 228, 241, 273, 328
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	2 cut(s)	206, 220
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	245, 248
MfeI	CAATTG	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	2 cut(s)	68, 140
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	2 cut(s)	238, 319
Mox20I	TGGCCA	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	4 cut(s)	56, 215, 228, 260
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	130, 301
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	22, 120, 281
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	307
PscI	ACATGT	1 cut(s)	126
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	6 cut(s)	160, 209, 223, 249, 277, 307
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	68, 140
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	2 cut(s)	209, 223
TaqI	TCGA	2 cut(s)	32, 123
TasI	AATT	2 cut(s)	68, 140
TfiI	GAWTC	3 cut(s)	22, 120, 281
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	17, 153, 286
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	63
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.