RchiOBHm_Chr6g0309451

SPOC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
67145764 .. 67147599
1836 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGACCAAGCGTACAGATTTTCGGCATGTGAAGTCAACATTTACTAGCACCCCACCACATAAGAGGGAAGTGTGTCGATTGATCCCATCTTCTGCAGCTGATCAGAAAGGGTTTCAGGATTTCTTGTCATACTTGAAGCAGAGGGACTGCTCTGGAGTGATCAAGATCCCAGCGGTGAATTCCATGTGGGCCAGACTTCTCTTCATACTTCCATACTCGGAAGAGACTTGCTCTATGCTCTCTATTGCGCCTTGTCAACCTGATTGCCTCATTGCTTTAATATTACCTAAAGAAACGAATTTTGAGTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

8.68

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC PF07744 1 - 96 1.8e-12 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 76, 160
AcsI RAATTY 2 cut(s) 178, 298
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 76, 160
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 178, 298
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 187
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 94
BclI TGATCA 2 cut(s) 100, 159
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 164
BseJI GATNNNNATC 1 cut(s) 164
BseMI GCAATG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 4 cut(s) 81, 100, 159, 165
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 2 cut(s) 76, 160
BsrDI GCAATG 1 cut(s) 270
BssMI GATC 4 cut(s) 81, 100, 159, 165
Bst6I CTCTTC 2 cut(s) 206, 216
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 84, 103, 162, 168
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 4 cut(s) 81, 100, 159, 165
BstNSI RCATGY 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 191
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 26, 184
CviJI RGCY 2 cut(s) 98, 191
CviKI_1 RGCY 2 cut(s) 98, 191
CviQI GTAC 1 cut(s) 12
DpnI GATC 4 cut(s) 83, 102, 161, 167
DpnII GATC 4 cut(s) 81, 100, 159, 165
Eam1104I CTCTTC 2 cut(s) 206, 216
EarI CTCTTC 2 cut(s) 206, 216
EcoRI GAATTC 1 cut(s) 178
FaeI CATG 2 cut(s) 29, 187
FaiI YATR 8 cut(s) 27, 60, 130, 185, 206, 214, 236, 313
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 25, 183
FbaI TGATCA 2 cut(s) 100, 159
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 29, 187
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 2 cut(s) 36, 257
HindII GTYRAC 2 cut(s) 36, 257
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 36, 257
Hpy188I TCNGA 2 cut(s) 105, 220
Hpy188III TCNNGA 3 cut(s) 116, 153, 163
Hpy8I GTNNAC 2 cut(s) 36, 257
HpyCH4V TGCA 1 cut(s) 95
Hsp92II CATG 2 cut(s) 29, 187
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 2 cut(s) 100, 159
Kzo9I GATC 4 cut(s) 81, 100, 159, 165
LpnPI CCDG 5 cut(s) 101, 138, 183, 205, 273
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 45
MalI GATC 4 cut(s) 83, 102, 161, 167
MboI GATC 4 cut(s) 81, 100, 159, 165
MboII GAAGA 3 cut(s) 81, 193, 233
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 178, 298
MnlI CCTC 3 cut(s) 57, 135, 278
MseI TTAA 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 98, 173
NdeII GATC 4 cut(s) 81, 100, 159, 165
NlaIII CATG 2 cut(s) 29, 187
NspI RCATGY 1 cut(s) 29
PkrI GCNGC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 81, 100, 159, 165
Sau96I GGNCC 1 cut(s) 189
SetI ASST 3 cut(s) 100, 262, 289
SfcI CTRYAG 1 cut(s) 93
Sse9I AATT 2 cut(s) 178, 298
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 282
SspMI CTAG 1 cut(s) 45
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 178, 298
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 193
XapI RAATTY 2 cut(s) 178, 298
XceI RCATGY 1 cut(s) 29
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.