Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

68108286 .. 68108694

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATATCATACTCTAACCCGAACAGTGCAGGAGCTCTGGTCACTGAAGGCATCTTGGATTCCATGTCTGCTGGTATTCTGGTCTACATGGCCTTGGTGGACCTAATTGCTGCTGACTTTCTGAGAAAGAGGATGAGCTGCAATTTTCGGCTTCAAATTCTGTCTTATTGCTTGCTATTTCTTGGAGCTGGGTCGATGTCTTTGCTTGCAATTTGGGCTGATGCAAGTGTGAATTCAATTCTTTCGGCTTGGTTCTTCCCAAGAGGGAAATTGAGTGGAGCAATTAAGGGACTAGATGTTGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

102

Amino Acids

10.95

Weight (kDa)

6.13

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	6 - 70	1.3e-16	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	156, 232
AcuI	CTGAAG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	155, 237
AluBI	AGCT	3 cut(s)	35, 138, 188
AluI	AGCT	3 cut(s)	35, 138, 188
Alw21I	GWGCWC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	110, 138
ApoI	RAATTY	2 cut(s)	156, 232
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	97, 125
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	2 cut(s)	111, 139
BlsI	GCNGC	2 cut(s)	112, 140
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	60, 211
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	97, 125
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	173, 207
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	97, 125
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	31, 42
Cac8I	GCNNGC	2 cut(s)	173, 207
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	2 cut(s)	64, 88
CviJI	RGCY	7 cut(s)	35, 92, 138, 151, 188, 218, 248
CviKI_1	RGCY	7 cut(s)	35, 92, 138, 151, 188, 218, 248
DdeI	CTNAG	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	67, 91
FaiI	YATR	3 cut(s)	10, 65, 89
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	63, 87
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	111, 139
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	111, 139
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	111, 139
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	67, 91
HinfI	GANTC	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	85, 100
Hpy188I	TCNGA	1 cut(s)	123
Hpy8I	GTNNAC	2 cut(s)	85, 100
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	29, 141, 209, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	67, 91
LmnI	GCTCC	3 cut(s)	32, 185, 278
LpnPI	CCDG	5 cut(s)	15, 23, 57, 65, 174
Lsp1109I	GCAGC	2 cut(s)	97, 125
LweI	GCATC	2 cut(s)	60, 211
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	8 cut(s)	105, 142, 156, 210, 232, 237, 269, 282
MnlI	CCTC	2 cut(s)	123, 257
MseI	TTAA	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	67, 91
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	112, 140
Psp124BI	GAGCTC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	111, 139
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	4 cut(s)	37, 105, 140, 190
SfaNI	GCATC	2 cut(s)	60, 211
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	8 cut(s)	105, 142, 156, 210, 232, 237, 269, 282
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	194
TasI	AATT	8 cut(s)	105, 142, 156, 210, 232, 237, 269, 282
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	31, 49
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	110, 138
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	2 cut(s)	31, 49
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	156, 232
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.