Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

68983844 .. 68984335

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATGCCGCCAATTTTATATAACACAACATGCATGTTCTTTTCATCCCAGACTATTAATAAACCTGCCGATGGCTCTTACAGATATAGTGCACCTCCCCATGGTGGATTTGGAGTAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCGCAAAACATCCTTATTCCCACGTGATCCGCTCCGGCTAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

69

Amino Acids

7.69

Weight (kDa)

9.59

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	27 - 63	3.1e-12	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	193
AciI	CCGC	3 cut(s)	8, 163, 191
AclWI	GGATC	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	71, 101, 104
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	90
AseI	ATTAAT	1 cut(s)	57
AsuNHI	GCTAGC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	94
BccI	CCATC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 101, 104
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	44, 159, 170
BseLI	CCNNNNNNNGG	3 cut(s)	71, 101, 104
BseSI	GKGCMC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	71, 101, 104
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	3 cut(s)	8, 163, 191
BspMI	ACCTGC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	44, 159, 170
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNSI	RCATGY	2 cut(s)	33, 37
BstSLI	GKGCMC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	44, 159, 170
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	201
CviAII	CATG	3 cut(s)	30, 34, 101
CviJI	RGCY	4 cut(s)	75, 121, 199, 203
CviKI_1	RGCY	4 cut(s)	75, 121, 199, 203
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	33, 37, 104
FaiI	YATR	6 cut(s)	19, 21, 31, 35, 87, 102
FatI	CATG	3 cut(s)	29, 33, 100
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	3 cut(s)	31, 146, 157
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	143
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	3 cut(s)	33, 37, 104
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	33, 92
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	33, 37, 104
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	124, 198, 208
LpnPI	CCDG	3 cut(s)	62, 78, 107
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	184
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	1 cut(s)	105
Mph1103I	ATGCAT	1 cut(s)	35
MseI	TTAA	1 cut(s)	57
MspI	CCGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	187
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	33, 37, 104
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	2 cut(s)	33, 37
PciSI	GCTCTTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	9
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	67, 97, 187, 205
SfaNI	GCATC	1 cut(s)	126
SgeI	CNNG	9 cut(s)	42, 46, 61, 77, 113, 134, 140, 195, 197
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	3 cut(s)	8, 163, 191
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	187
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	57
XceI	RCATGY	2 cut(s)	33, 37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.