RchiOBHm_Chr6g0312361

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
68987669 .. 68988842
1174 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGATATTGTTAGCAGGTTGTTTGTTACTATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTTACTTGCCTGAGACTCTACGTCTTACTTTTGCGGAAGGTGTTCAAATGCTAAAGGAGGCTGGTGTCGAAGTTGATCCTACGGGGGACCTAAATACTGAAGCAGAGAGGAAGTTGGGCCAATTAGTTTTGGAAAAGTGA

Protein Analysis

70

Amino Acids

7.99

Weight (kDa)

4.48

Isoelectric Point (pI)

20.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 6
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 3 cut(s) 46, 71, 119
AhdI GACNNNNNGTC 1 cut(s) 93
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 160, 190
AvaII GGWCC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 160, 190
BmiI GGNNCC 1 cut(s) 161
BseMII CTCAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 6
BspPI GGATC 1 cut(s) 143
BssMI GATC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 192
BveI ACCTGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 160, 190
CviJI RGCY 3 cut(s) 74, 134, 192
CviKI_1 RGCY 3 cut(s) 74, 134, 192
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 160
FaiI YATR 1 cut(s) 32
FaqI GGGAC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 55, 104
HpyCH4IV ACGT 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 94
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 96, 120
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 2 cut(s) 52, 194
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 2 cut(s) 124, 174
MroXI GAANNNNTTC 1 cut(s) 114
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 114
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 160, 190
PspPPI RGGWCCY 1 cut(s) 160
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 160, 190
SchI GAGTC 1 cut(s) 82
SetI ASST 5 cut(s) 20, 76, 97, 115, 165
SgeI CNNG 6 cut(s) 28, 80, 91, 95, 147, 168
SinI GGWCC 1 cut(s) 160
Sse9I AATT 2 cut(s) 52, 194
SsiI CCGC 1 cut(s) 107
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 52, 194
VpaK11BI GGWCC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.