Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64926 .. 66609

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACGACCAACACCAGCTGATGGCGATGCAGATATCACCGGCCGATTCCAATGGTACCACTCCGGCCAAGGAGCAGCAGGCCGCCGGAGTTGGCATTCTTCTCCAGATCATGATGCTCGTCCTCTCTTTTGTCCTAGGTCATGTCCTCCGCCGCCACAAATTCTATTATCTCCCCGAGGCCAGCGCTTCGCTTTTGATAGGGCCTGGTTCAATTTTCACGAGGAGTTCTTCTTTCTCTTCCTTTTACCTCCCATCATATTATATCCAAAACTTACCTTGTTTTTTCTTGCAACATTTTCGTTTTTTTTTTTATATATATATATATATTTTTATATCGGCTGCGGTATGGTTTTCCTTGACGCTTTTTGTTCTCACTCAGTCTGGCTTCAGTCTTTCACCTAAACCTTTCTTCTCTAACTTTGGAGCCATTGTCACTTTCGCTATCCTTGGAACCTTTATAGCTTCTGTTGTCACTGGTGTTCTAGTCTACCTTGGCGGTCTGATATACCTCACCTACAGACTTCCATTTGTGGAGTGCTTGATGTTTGGTGCTCTTATATCAGCAACCGATCCAGTCACTGTCTTGTCCATCTTTCAGGAACTTGGCACAGATATGAACTTGTATGCTCTGGTGTTTGGGGAATCTGTTTTGAATGATGCGGTCAGTTTCCGTTGCTGTGTATTTATAGCCCATTTTGTTATGACATCATTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

239

Amino Acids

26.64

Weight (kDa)

6.16

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	125 - 230	2.8e-18	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	6 cut(s)	84, 151, 154, 344, 498, 662
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	2 cut(s)	42, 66
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	58
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	213, 655
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	19, 464
AluI	AGCT	2 cut(s)	19, 464
Alw21I	GWGCWC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	5 cut(s)	42, 66, 81, 180, 203
ApeKI	GCWGC	2 cut(s)	76, 341
ApoI	RAATTY	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	56
AspA2I	CCTAGG	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	30, 390, 505
AvaI	CYCGRG	1 cut(s)	176
AvrII	CCTAGG	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	88, 328
BccI	CCATC	3 cut(s)	16, 262, 599
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	207
BfaI	CTAG	2 cut(s)	137, 485
BfmI	CTRYAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	4 cut(s)	77, 84, 154, 342
BlnI	CCTAGG	1 cut(s)	136
BlsI	GCNGC	4 cut(s)	78, 85, 155, 343
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	58, 427, 454
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	3 cut(s)	18, 105, 649
BpmI	CTGGAG	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	69, 136, 177, 448, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	481, 575
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	5 cut(s)	69, 136, 177, 448, 493
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	481, 575
BseRI	GAGGAG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	88, 328
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	5 cut(s)	44, 68, 83, 182, 205
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	41, 65, 87
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	5 cut(s)	44, 68, 83, 182, 205
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	2 cut(s)	108, 571
BspACI	CCGC	6 cut(s)	84, 151, 154, 344, 498, 662
BspANI	GGCC	5 cut(s)	44, 68, 83, 182, 205
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	58, 427, 454
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	481, 575
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	69, 136, 177, 448, 493
BssMI	GATC	2 cut(s)	108, 571
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	4 cut(s)	69, 136, 448, 493
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	81, 184
BstDEI	CTNAG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	111, 574
BstMBI	GATC	2 cut(s)	108, 571
BstMCI	CGRYCG	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	88, 328
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	5 cut(s)	44, 68, 83, 182, 205
BtgZI	GCGATG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	474, 579
Cac8I	GCNNGC	2 cut(s)	81, 184
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	112, 143
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	110, 573
DpnII	GATC	2 cut(s)	108, 571
EaeI	YGGCCR	2 cut(s)	42, 66
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	42
Eco130I	CCWWGG	4 cut(s)	69, 136, 448, 493
Eco32I	GATATC	1 cut(s)	36
Eco47III	AGCGCT	1 cut(s)	187
Eco52I	CGGCCG	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	4 cut(s)	69, 136, 448, 493
ErhI	CCWWGG	4 cut(s)	69, 136, 448, 493
FaeI	CATG	2 cut(s)	115, 146
FatI	CATG	2 cut(s)	111, 142
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	77, 84, 154, 342
Fsp4HI	GCNGC	4 cut(s)	77, 84, 154, 342
FspBI	CTAG	2 cut(s)	137, 485
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	77, 84, 154, 342
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	44, 68, 83, 182, 205
HapII	CCGG	3 cut(s)	41, 65, 87
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	115, 146
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	47, 644
HpaII	CCGG	3 cut(s)	41, 65, 87
HphI	GGTGA	3 cut(s)	30, 390, 505
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	4 cut(s)	106, 112, 220, 599
Hpy8I	GTNNAC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	2 cut(s)	31, 292
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	115, 146
HspAI	GCGC	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	108, 571
LmnI	GCTCC	2 cut(s)	73, 425
Lsp1109I	GCAGC	2 cut(s)	88, 328
LweI	GCATC	3 cut(s)	18, 105, 649
MaeI	CTAG	2 cut(s)	137, 485
MaeIII	GTNAC	3 cut(s)	433, 472, 577
MalI	GATC	2 cut(s)	110, 573
MboI	GATC	2 cut(s)	108, 571
MboII	GAAGA	4 cut(s)	92, 222, 231, 403
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	2 cut(s)	161, 213
MnlI	CCTC	6 cut(s)	134, 158, 172, 216, 260, 521
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	3 cut(s)	41, 65, 87
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	108, 571
NlaIII	CATG	2 cut(s)	115, 146
NlaIV	GGNNCC	3 cut(s)	58, 427, 454
NmuCI	GTSAC	3 cut(s)	433, 472, 577
PagI	TCATGA	1 cut(s)	111
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	47, 644
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	78, 85, 155, 343
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	58, 427, 454
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	614
SatI	GCNGC	4 cut(s)	77, 84, 154, 342
Sau3AI	GATC	2 cut(s)	108, 571
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	18, 105, 649
SfcI	CTRYAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	614
Sse9I	AATT	2 cut(s)	161, 213
SsiI	CCGC	6 cut(s)	84, 151, 154, 344, 498, 662
SspMI	CTAG	2 cut(s)	137, 485
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	4 cut(s)	69, 136, 448, 493
TaaI	ACNGT	1 cut(s)	583
TasI	AATT	2 cut(s)	161, 213
TauI	GCSGC	2 cut(s)	86, 156
TfiI	GAWTC	2 cut(s)	47, 644
TscAI	CASTG	2 cut(s)	481, 586
TseFI	GTSAC	3 cut(s)	433, 472, 577
TseI	GCWGC	2 cut(s)	76, 341
Tsp45I	GTSAC	3 cut(s)	433, 472, 577
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	2 cut(s)	481, 586
Van91I	CCANNNNNTGG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	2 cut(s)	137, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.