RchiOBHm_Chr5g0000101

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
109055 .. 109870
816 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGCGGTGGCAGTGCGAGGAAGCAGAGCAGGATCTGATTTCGGCAGGTTTAGCCTCCAGAGCTTCTTCTCGTATTGGATCTTCGGGTGCTCAGACTGGTACAAATCCCTCTTCTTCTTCTTCAATGGTTTCAAAAGAATTCCCTCTTCGAGATGTGATCCCCAATTTTTCAATTTGAGAGATGAGTTCCAATTTTTCCGGGTTTGA

Protein Analysis

68

Amino Acids

8.15

Weight (kDa)

9.69

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 40, 86, 152
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 3 cut(s) 124, 133, 172
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 3 cut(s) 40, 86, 152
AlwNI CAGNNNCTG 1 cut(s) 35
ApoI RAATTY 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
Bbv12I GWGCWC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 32, 78, 157
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 40, 86, 152
BsrI ACTGG 1 cut(s) 101
BssMI GATC 3 cut(s) 32, 78, 157
Bst6I CTCTTC 2 cut(s) 116, 151
BstDEI CTNAG 1 cut(s) 91
BstKTI GATC 3 cut(s) 35, 81, 160
BstMBI GATC 3 cut(s) 32, 78, 157
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstSCI CCNGG 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 32, 78
BstYI RGATCY 2 cut(s) 32, 78
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 2 cut(s) 54, 63
CviKI_1 RGCY 2 cut(s) 54, 63
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 91
DpnI GATC 3 cut(s) 34, 80, 159
DpnII GATC 3 cut(s) 32, 78, 157
Eam1104I CTCTTC 2 cut(s) 116, 151
EarI CTCTTC 2 cut(s) 116, 151
EcoRI GAATTC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 41
HapII CCGG 1 cut(s) 199
HpaII CCGG 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 37, 94
Hpy188III TCNNGA 2 cut(s) 58, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpyF3I CTNAG 1 cut(s) 91
Kzo9I GATC 3 cut(s) 32, 78, 157
LpnPI CCDG 4 cut(s) 15, 31, 71, 82
MalI GATC 3 cut(s) 34, 80, 159
MboI GATC 3 cut(s) 32, 78, 157
MboII GAAGA 7 cut(s) 58, 73, 103, 106, 109, 112, 138
MflI RGATCY 2 cut(s) 32, 78
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 138, 164, 172, 191
MnlI CCTC 4 cut(s) 11, 65, 119, 154
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NciI CCSGG 1 cut(s) 200
NdeII GATC 3 cut(s) 32, 78, 157
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 2 cut(s) 32, 78
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
Sau3AI GATC 3 cut(s) 32, 78, 157
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 92
SetI ASST 2 cut(s) 50, 65
SgeI CNNG 8 cut(s) 29, 42, 58, 70, 82, 97, 109, 162
Sse9I AATT 4 cut(s) 138, 164, 172, 191
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 149
TasI AATT 4 cut(s) 138, 164, 172, 191
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.