Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1136462 .. 1137521

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTGATGAATTCGGAGCGGGTTGCGAGTCAATTTTGGGTCTTGAATCTGACCGATCCGGTGACGATCGGGATGGGTCACAGCTACGATCGGAGCTCCATTACGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGGAAACAAGGGAGAAAAATAAGAACATGGAGAATGGGATTCCGTTTGGCGATTCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATCGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGGTTCGAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

142

Amino Acids

15.29

Weight (kDa)

9.37

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	17 - 54	9.9e-06	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	221, 404
AccB1I	GGYRCC	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	3 cut(s)	19, 242, 386
AclWI	GGATC	2 cut(s)	50, 307
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	46, 397
AluBI	AGCT	7 cut(s)	84, 96, 119, 237, 254, 374, 400
AluI	AGCT	7 cut(s)	84, 96, 119, 237, 254, 374, 400
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	50, 307
Aor13HI	TCCGGA	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	411
BfuAI	ACCTGC	2 cut(s)	221, 404
BisI	GCNGC	2 cut(s)	243, 386
BlsI	GCNGC	2 cut(s)	244, 387
BmiI	GGNNCC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	419
BsaWI	WCCGGW	3 cut(s)	58, 136, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	136
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	243
Bsh1285I	CGRYCG	2 cut(s)	69, 91
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	2 cut(s)	69, 91
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	59, 137, 192
BslI	CCNNNNNNNGG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	55, 66, 88, 299
BspACI	CCGC	3 cut(s)	19, 242, 386
BspCNI	CTCAG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	2 cut(s)	221, 404
BspPI	GGATC	2 cut(s)	50, 307
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	382
BsrBI	CCGCTC	1 cut(s)	19
BssMI	GATC	4 cut(s)	55, 66, 88, 299
BstBI	TTCGAA	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	58, 69, 91, 302
BstMBI	GATC	4 cut(s)	55, 66, 88, 299
BstMCI	CGRYCG	2 cut(s)	69, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSFI	CTRYAG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	2 cut(s)	221, 404
CviAII	CATG	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	57, 68, 90, 301
DpnII	GATC	4 cut(s)	55, 66, 88, 299
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 257
FatI	CATG	1 cut(s)	162
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	243, 386
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	243, 386
GluI	GCNGC	2 cut(s)	243, 386
GsuI	CTGGAG	1 cut(s)	396
HapII	CCGG	3 cut(s)	59, 137, 192
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	6 cut(s)	28, 46, 175, 188, 202, 322
HpaII	CCGG	3 cut(s)	59, 137, 192
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	16, 51, 93, 116, 201
Hpy188III	TCNNGA	4 cut(s)	43, 70, 137, 206
HpyCH4V	TGCA	3 cut(s)	224, 230, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	55, 66, 88, 299
LmnI	GCTCC	4 cut(s)	16, 93, 101, 251
LpnPI	CCDG	7 cut(s)	72, 105, 150, 205, 216, 360, 399
MaeIII	GTNAC	2 cut(s)	61, 77
MalI	GATC	4 cut(s)	57, 68, 90, 301
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	4 cut(s)	55, 66, 88, 299
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	2 cut(s)	10, 32
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	210, 241
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	2 cut(s)	351, 427
MspI	CCGG	3 cut(s)	59, 137, 192
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	4 cut(s)	55, 66, 88, 299
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	61, 77
NspV	TTCGAA	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	5 cut(s)	46, 175, 188, 202, 322
PkrI	GCNGC	2 cut(s)	244, 387
Ple19I	CGATCG	2 cut(s)	69, 91
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	415
PvuI	CGATCG	2 cut(s)	69, 91
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	351, 427
SatI	GCNGC	2 cut(s)	243, 386
Sau3AI	GATC	4 cut(s)	55, 66, 88, 299
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	419
Sse9I	AATT	2 cut(s)	10, 32
SsiI	CCGC	3 cut(s)	19, 242, 386
SstI	GAGCTC	1 cut(s)	98
TaqI	TCGA	2 cut(s)	302, 419
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	10, 32
TauI	GCSGC	2 cut(s)	245, 388
TfiI	GAWTC	5 cut(s)	46, 175, 188, 202, 322
Tru1I	TTAA	2 cut(s)	351, 427
Tru9I	TTAA	2 cut(s)	351, 427
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	61, 77
Tsp45I	GTSAC	2 cut(s)	61, 77
TspDTI	ATGAA	2 cut(s)	23, 272
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.