RchiOBHm_Chr5g0002071

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
1162248 .. 1163822
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGATCTGCAAAAGCGGTAAACAGATAGAAGACACGATACTACTGACTTTGCTTAGTCCTGAAACATATGATGAAATTGCCCATGGAACTCGTCGCAAATTTGAGTCAAACAAACCTCGAGCTGTACTCTTCGAAGGCCCACCAGGTACAGGGAAAACTTCTTCTGCTCGTGTCATTGCTAATCAAGCGGTGAGCTGCTACGCATTTCAATGCCCCCTTTTTAGTGCCGTCCCAATGTTATATGTTCCCCTTGAGGTTATCTTGTCCAAGTACTATGGTGAGAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
AAA

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

6.57

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 42 - 96 2.2e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 188
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 3 cut(s) 126, 148, 272
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 122, 195
AluI AGCT 2 cut(s) 122, 195
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 202, 290
AsuII TTCGAA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 144
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 182
BshFI GGCC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 2 cut(s) 15, 188
BspANI GGCC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 82
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 142
Csp6I GTAC 3 cut(s) 125, 147, 271
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 122, 138, 195
CviKI_1 RGCY 3 cut(s) 122, 138, 195
CviQI GTAC 3 cut(s) 125, 147, 271
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 86
FaiI YATR 6 cut(s) 67, 69, 84, 241, 243, 276
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 82
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 104
HphI GGTGA 2 cut(s) 202, 290
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 72, 129, 135, 156
Lsp1109I GCAGC 1 cut(s) 182
MabI ACCWGGT 1 cut(s) 142
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 41, 121, 153
MluCI AATT 2 cut(s) 75, 98
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 2 cut(s) 126, 247
MslI CAYNNNNRTG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 67
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 86
NspV TTCGAA 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 117
RsaI GTAC 3 cut(s) 126, 148, 272
RsaNI GTAC 3 cut(s) 125, 147, 271
RseI CAYNNNNRTG 1 cut(s) 208
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 137
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 144
SetI ASST 5 cut(s) 118, 124, 148, 197, 258
SexAI ACCWGGT 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 117, 251
SmoI CTYRAG 2 cut(s) 117, 251
Sse9I AATT 2 cut(s) 75, 98
SsiI CCGC 2 cut(s) 15, 188
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 2 cut(s) 118, 132
TasI AATT 2 cut(s) 75, 98
TatI WGTACW 2 cut(s) 124, 270
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 87
XapI RAATTY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.