RchiOBHm_Chr5g0002081

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
1164280 .. 1165597
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGCCCTTATTGAATGAACCATTTCCTGTGCAGATTGATAGATTTGAACAGGATAAGAAAGTGGTTGTAATTGCTGCAACAAATAGGAAGCAAGACCTCGACCCGGCCCTGATCAGTCGGTTCGATTCAATTATCCCATTTGGCCTACCTGATCATCAAAATCGTAAGGAAATAGCAGCTCAGTATGCAAAGCATCTAACCGAAACTGAATTAGATGAATTGGCAACAGTAACAGAAGAGATGTCTGGAAGGGATATCAGAGATGTGTGTCAACAAGCAGAGAGGTCGTGGGCATCAAAGCTGATCCGAGGAAAAGTACCCAAAGACGGAGACCAAACCCGTCTTCCACCTCTGCAGGACTACATAGGGAGTGCCATGAATCGACGCAAGGGATTCCTCAGCTCCCCACCCCGACAAACCCAAAATTCCGCGTCTGACATAAAGAAGGCCAGGGTTGTACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
AAA

Protein Analysis

155

Amino Acids

17.57

Weight (kDa)

7.85

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 11 - 48 1.9e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 2 cut(s) 318, 459
AfiI CCNNNNNNNGG 2 cut(s) 103, 326
AgsI TTSAA 3 cut(s) 13, 47, 129
AjnI CCWGG 1 cut(s) 449
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 3 cut(s) 179, 301, 402
AluI AGCT 3 cut(s) 179, 301, 402
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 298
AoxI GGCC 3 cut(s) 105, 142, 447
ApeKI GCWGC 2 cut(s) 74, 176
ApoI RAATTY 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 335
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 61, 188
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 2 cut(s) 111, 151
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 353
BisI GCNGC 2 cut(s) 75, 177
BlsI GCNGC 2 cut(s) 76, 178
Bme1390I CCNGG 2 cut(s) 104, 451
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 104, 451
BmsI GCATC 2 cut(s) 202, 302
BpiI GAAGAC 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 307, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 326
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 307, 450
BseLI CCNNNNNNNGG 2 cut(s) 103, 326
BseMII CTCAG 2 cut(s) 194, 412
BseXI GCAGC 2 cut(s) 61, 188
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 3 cut(s) 107, 144, 449
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 103, 326
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 3 cut(s) 107, 144, 449
Bso31I GGTCTC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 111, 151, 303
BspACI CCGC 1 cut(s) 429
BspANI GGCC 3 cut(s) 107, 144, 449
BspCNI CTCAG 2 cut(s) 193, 411
BspFNI CGCG 1 cut(s) 431
BspMAI CTGCAG 1 cut(s) 357
BspPI GGATC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 307, 450
BssMI GATC 3 cut(s) 111, 151, 303
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 180, 398
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 3 cut(s) 114, 154, 306
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 111, 151, 303
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 102, 449
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 61, 188
BstV2I GAAGAC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 107, 144, 449
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 2 cut(s) 393, 420
Csp6I GTAC 2 cut(s) 317, 458
CviAII CATG 1 cut(s) 376
CviJI RGCY 6 cut(s) 107, 144, 179, 301, 402, 449
CviKI_1 RGCY 6 cut(s) 107, 144, 179, 301, 402, 449
CviQI GTAC 2 cut(s) 317, 458
DdeI CTNAG 2 cut(s) 180, 398
DpnI GATC 3 cut(s) 113, 153, 305
DpnII GATC 3 cut(s) 111, 151, 303
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 449
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 379
FaiI YATR 4 cut(s) 186, 365, 377, 440
FatI CATG 1 cut(s) 375
FbaI TGATCA 2 cut(s) 111, 151
Fnu4HI GCNGC 2 cut(s) 75, 177
Fsp4HI GCNGC 2 cut(s) 75, 177
GluI GCNGC 2 cut(s) 75, 177
HaeIII GGCC 3 cut(s) 107, 144, 449
HapII CCGG 1 cut(s) 104
HgaI GACGC 2 cut(s) 393, 420
Hin1II CATG 1 cut(s) 379
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HinfI GANTC 3 cut(s) 125, 379, 393
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 260, 308, 436
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 243, 439
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 31, 77, 188, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 180, 398
Hsp92II CATG 1 cut(s) 379
Ksp22I TGATCA 2 cut(s) 111, 151
Kzo9I GATC 3 cut(s) 111, 151, 303
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 9 cut(s) 35, 39, 117, 122, 162, 231, 341, 436, 463
Lsp1109I GCAGC 2 cut(s) 61, 188
LweI GCATC 2 cut(s) 202, 302
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 113, 153, 305
MboI GATC 3 cut(s) 111, 151, 303
MboII GAAGA 2 cut(s) 248, 335
MluCI AATT 5 cut(s) 69, 129, 209, 218, 424
MnlI CCTC 5 cut(s) 107, 276, 302, 360, 407
MroXI GAANNNNTTC 1 cut(s) 21
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 104, 451
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 111, 151, 303
NlaIII CATG 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 125, 379, 393
PkrI GCNGC 2 cut(s) 76, 178
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspPI GGNCC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 357
RsaI GTAC 2 cut(s) 318, 459
RsaNI GTAC 2 cut(s) 317, 458
SatI GCNGC 2 cut(s) 75, 177
Sau3AI GATC 3 cut(s) 111, 151, 303
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 104, 451
SetI ASST 7 cut(s) 99, 151, 181, 287, 303, 352, 404
SfaNI GCATC 2 cut(s) 202, 302
SfcI CTRYAG 1 cut(s) 353
Sse9I AATT 5 cut(s) 69, 129, 209, 218, 424
SsiI CCGC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 102, 449
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 99, 123, 382
TasI AATT 5 cut(s) 69, 129, 209, 218, 424
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 3 cut(s) 125, 379, 393
TseI GCWGC 2 cut(s) 74, 176
TspDTI ATGAA 3 cut(s) 30, 231, 392
TspGWI ACGGA 1 cut(s) 342
XapI RAATTY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.