RchiOBHm_Chr5g0003351

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
2098411 .. 2098614
204 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGACTACTCCAGTGAGCTCTCTGAACCCATCTTGACTGACAAAAGATCTTCATCTGTTCAACTAGTGAGCTCGGAACTGGAAGAAACGCTCTCCAACACCGAGCTTCCGTACTTCCACCGTCTTAGACGTGCCACGTGGGTCGAACTGAAGATTCTCTTCCGACTTGCAGCTCCGGCAGTACGGTGGTGGTTTACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

67

Amino Acids

7.95

Weight (kDa)

5.72

Isoelectric Point (pI)

79.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 1 cut(s) 138
AfaI GTAC 2 cut(s) 113, 183
AgsI TTSAA 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 64
AjiI CACGTC 1 cut(s) 131
AluBI AGCT 4 cut(s) 19, 72, 106, 173
AluI AGCT 4 cut(s) 19, 72, 106, 173
Alw21I GWGCWC 2 cut(s) 21, 74
ApeKI GCWGC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 21, 74
BbrPI CACGTG 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 21, 74
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 47
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 12, 84
Bse8I GATNNNNATC 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 52
BseNI ACTGG 2 cut(s) 12, 84
BseXI GCAGC 1 cut(s) 182
BsiHKAI GWGCWC 2 cut(s) 21, 74
BsiSI CCGG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 21, 74
Bsp143I GATC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 12, 84
BssMI GATC 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 122, 186
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtrI CACGTC 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 19
Csp6I GTAC 2 cut(s) 112, 182
CviJI RGCY 4 cut(s) 19, 72, 106, 173
CviKI_1 RGCY 4 cut(s) 19, 72, 106, 173
CviQI GTAC 2 cut(s) 112, 182
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Ecl136II GAGCTC 2 cut(s) 19, 72
Eco24I GRGCYC 2 cut(s) 21, 74
Eco53kI GAGCTC 2 cut(s) 19, 72
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 138
EcoICRI GAGCTC 2 cut(s) 19, 72
EcoT38I GRGCYC 2 cut(s) 21, 74
FalI AAGNNNNNCTT 2 cut(s) 143, 175
Fnu4HI GCNGC 1 cut(s) 171
FriOI GRGCYC 2 cut(s) 21, 74
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 176
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 25, 76, 164
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 122, 186
HpyCH4IV ACGT 2 cut(s) 130, 137
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 2 cut(s) 130, 137
Kzo9I GATC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 25, 65, 189
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 130, 137
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 4 cut(s) 42, 95, 151, 163
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 21, 74
MmeI TCCRAC 2 cut(s) 120, 187
MspI CCGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 138
PmlI CACGTG 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 138
Psp124BI GAGCTC 2 cut(s) 21, 74
PspCI CACGTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 2 cut(s) 113, 183
RsaNI GTAC 2 cut(s) 112, 182
SacI GAGCTC 2 cut(s) 21, 74
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 47
SduI GDGCHC 2 cut(s) 21, 74
SetI ASST 6 cut(s) 21, 74, 108, 133, 140, 175
SpeI ACTAGT 1 cut(s) 64
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 2 cut(s) 21, 74
TaaI ACNGT 2 cut(s) 122, 186
TaiI ACGT 2 cut(s) 133, 140
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 1 cut(s) 19
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 19
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.