Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2311954 .. 2314278

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGTCTTCTTATCATCCACAAACACAGTTTTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGTCTCAACAACTGGGATATCTTCACTCACAAGCCTGGTACTATCCTAGATGGAACTAATGGAGACATTGCTGTTGATCGACTTATGGATCTCATGAATTACATTGGAGTTAACAGCTGCCGTTTTTCTATATCATGGGCAAGAATTTTACCCAGAATCCAGCCCTTTGTGACATTGAGTCACTACGACGTACCTCAGGAACTTGAAGACATATGGATCTTGGCCAAGTTCCCTACCGCAGTAAGCAGCATATGTTCCCTTGCCTCCACTCTTGTCCAAGACCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGACAGAGTCAAGTATTGGTCCACTTTCAATGAGCCCAATGTTGTGGCCATTCGTGGATATATGTCAGGGATACACTCACCATCTCATTGCTCTCTCCCTTTTGGAAATTGTACTGTTGGAGATTCAGAAAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATCCAGCTGCTGCGAATATATACCGAACAAAATATCAGGTTTTTATTGAATGTCTCGTCTTAGATTCAATACCAACTCATAAGTTCAGTCGAATAATATATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

6.03

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	13 - 72	2.1e-15	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	74 - 200	5.4e-23	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	159, 287
AcoI	YGGCCR	2 cut(s)	285, 438
AcsI	RAATTY	2 cut(s)	207, 383
AfaI	GTAC	3 cut(s)	103, 255, 505
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	6 cut(s)	38, 269, 382, 421, 611, 630
AhdI	GACNNNNNGTC	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	97, 345
AluBI	AGCT	4 cut(s)	44, 180, 542, 569
AluI	AGCT	4 cut(s)	44, 180, 542, 569
Alw26I	GTCTC	4 cut(s)	71, 120, 387, 620
AlwI	GGATC	2 cut(s)	159, 287
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	285, 438
ApeKI	GCWGC	5 cut(s)	180, 309, 539, 569, 572
ApoI	RAATTY	2 cut(s)	207, 383
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	258
BalI	TGGCCA	2 cut(s)	287, 440
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	167, 321, 551, 556, 559
BccI	CCATC	4 cut(s)	50, 107, 481, 570
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	99, 347
BciVI	GTATCC	1 cut(s)	456
BcoDI	GTCTC	4 cut(s)	71, 120, 387, 620
BfaI	CTAG	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	5 cut(s)	181, 310, 540, 570, 573
BlsI	GCNGC	5 cut(s)	182, 311, 541, 571, 574
Bme1390I	CCNGG	2 cut(s)	99, 347
Bme18I	GGWCC	1 cut(s)	411
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	99, 347
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	3 cut(s)	129, 478, 534
BseBI	CCWGG	2 cut(s)	99, 347
BseGI	GGATG	2 cut(s)	16, 562
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	3 cut(s)	129, 478, 534
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	167, 321, 551, 556, 559
BshFI	GGCC	2 cut(s)	287, 440
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	4 cut(s)	71, 120, 387, 620
BsnI	GGCC	2 cut(s)	287, 440
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	139, 151, 279
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	287, 440
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	156
BspPI	GGATC	2 cut(s)	159, 287
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	3 cut(s)	129, 478, 534
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	139, 151, 279
Bst2UI	CCWGG	2 cut(s)	99, 347
Bst4CI	ACNGT	2 cut(s)	30, 508
BstDEI	CTNAG	2 cut(s)	258, 622
BstF5I	GGATG	2 cut(s)	16, 562
BstKTI	GATC	3 cut(s)	142, 154, 282
BstMAI	GTCTC	4 cut(s)	71, 120, 387, 620
BstMBI	GATC	3 cut(s)	139, 151, 279
BstNI	CCWGG	2 cut(s)	99, 347
BstSCI	CCNGG	2 cut(s)	97, 345
BstV1I	GCAGC	5 cut(s)	167, 321, 551, 556, 559
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	151, 279
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	151, 279
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	287, 440
BtsCI	GGATG	2 cut(s)	16, 562
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	102, 254, 504
CviAII	CATG	2 cut(s)	157, 198
CviQI	GTAC	3 cut(s)	102, 254, 504
DdeI	CTNAG	2 cut(s)	258, 622
DpnI	GATC	3 cut(s)	141, 153, 281
DpnII	GATC	3 cut(s)	139, 151, 279
DriI	GACNNNNNGTC	1 cut(s)	240
EaeI	YGGCCR	2 cut(s)	285, 438
Eam1105I	GACNNNNNGTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	97, 345
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	2 cut(s)	160, 201
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	2 cut(s)	156, 197
FauNDI	CATATG	2 cut(s)	275, 314
Fnu4HI	GCNGC	5 cut(s)	181, 310, 540, 570, 573
FokI	GGATG	2 cut(s)	3, 549
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	5 cut(s)	181, 310, 540, 570, 573
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	5 cut(s)	181, 310, 540, 570, 573
HaeIII	GGCC	2 cut(s)	287, 440
Hin1II	CATG	2 cut(s)	160, 201
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	219, 241, 399, 515, 626
HpaI	GTTAAC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	462
Hpy166II	GTNNAC	2 cut(s)	175, 414
Hpy188I	TCNGA	2 cut(s)	51, 520
Hpy188III	TCNNGA	2 cut(s)	157, 260
Hpy8I	GTNNAC	2 cut(s)	175, 414
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	30, 508
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	368, 539
HpyF3I	CTNAG	2 cut(s)	258, 622
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	160, 201
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	139, 151, 279
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	5 cut(s)	167, 321, 551, 556, 559
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	232, 242
MalI	GATC	3 cut(s)	141, 153, 281
MboI	GATC	3 cut(s)	139, 151, 279
MboII	GAAGA	3 cut(s)	76, 281, 362
MflI	RGATCY	2 cut(s)	151, 279
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	2 cut(s)	287, 440
MluCI	AATT	4 cut(s)	160, 207, 383, 499
MluNI	TGGCCA	2 cut(s)	287, 440
MlyI	GAGTC	2 cut(s)	250, 408
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	2 cut(s)	267, 337
Mox20I	TGGCCA	2 cut(s)	287, 440
MscI	TGGCCA	2 cut(s)	287, 440
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	2 cut(s)	287, 440
MspA1I	CMGCKG	2 cut(s)	180, 569
MspR9I	CCNGG	2 cut(s)	99, 347
MvaI	CCWGG	2 cut(s)	99, 347
NdeI	CATATG	2 cut(s)	275, 314
NdeII	GATC	3 cut(s)	139, 151, 279
NlaIII	CATG	2 cut(s)	160, 201
NmuCI	GTSAC	2 cut(s)	232, 242
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	219, 515, 626
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	182, 311, 541, 571, 574
PleI	GAGTC	2 cut(s)	249, 407
PpsI	GAGTC	2 cut(s)	249, 407
Psp6I	CCWGG	2 cut(s)	97, 345
PspGI	CCWGG	2 cut(s)	97, 345
PspPI	GGNCC	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	151, 279
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	2 cut(s)	180, 569
RsaI	GTAC	3 cut(s)	103, 255, 505
RsaNI	GTAC	3 cut(s)	102, 254, 504
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	181, 310, 540, 570, 573
Sau3AI	GATC	3 cut(s)	139, 151, 279
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	250, 408
ScrFI	CCNGG	2 cut(s)	99, 347
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	8 cut(s)	46, 67, 182, 255, 259, 544, 571, 603
SinI	GGWCC	1 cut(s)	411
Sse9I	AATT	4 cut(s)	160, 207, 383, 499
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	97, 345
TaaI	ACNGT	2 cut(s)	30, 508
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	142, 652
TasI	AATT	4 cut(s)	160, 207, 383, 499
TatI	WGTACW	1 cut(s)	503
TfiI	GAWTC	3 cut(s)	219, 515, 626
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	232, 242
TseI	GCWGC	5 cut(s)	180, 309, 539, 569, 572
Tsp45I	GTSAC	2 cut(s)	232, 242
TspDTI	ATGAA	2 cut(s)	173, 523
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	2 cut(s)	207, 383
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.