Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2583183 .. 2583476

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAATGCAAGTCCAATGACCAAACAACTCTCGTGGAGATGGATCCCGGGAGTTCTAAGATATTTGACGTTTCCTATTATACTCTTGTGGCCAAGAGAAGGGGCCTCTTTCAGTCAGATGCAGCTCTTCTTGATGACAGTGAGACCAAAGCTTACGTTAAAAACCATGCCACACCTAAGGGAAAAGCTAGTTTCTTGAAGGATTTTGGTGTTTCAATGGTGAAAATGGGTAGGATCGGAGTTCTCACGGGGAATGCAGGAGAGATCAGGAAAGTGTGCAGCAAGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

97

Amino Acids

10.61

Weight (kDa)

9.48

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	2 - 57	1.3e-10	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	38, 51, 242
AcoI	YGGCCR	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	199, 216
AluBI	AGCT	3 cut(s)	125, 152, 188
AluI	AGCT	3 cut(s)	125, 152, 188
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	38, 51, 242
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	90, 103
ApeKI	GCWGC	2 cut(s)	122, 279
AseI	ATTAAT	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	48, 49
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	123, 280
BlsI	GCNGC	2 cut(s)	124, 281
Bme1390I	CCNGG	2 cut(s)	48, 49
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	45, 104
BmrFI	CCNGG	2 cut(s)	48, 49
BmsI	GCATC	1 cut(s)	109
BpuMI	CCSGG	2 cut(s)	48, 49
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse21I	CCTNAGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	2 cut(s)	92, 105
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	92, 105
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	43, 234, 264
BspANI	GGCC	2 cut(s)	92, 105
BspLI	GGNNCC	2 cut(s)	45, 104
BspPI	GGATC	3 cut(s)	38, 51, 242
BspQI	GCTCTTC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	43, 234, 264
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	57, 177
BstKTI	GATC	3 cut(s)	46, 237, 267
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	43, 234, 264
BstSCI	CCNGG	2 cut(s)	46, 47
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	92, 105
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	103
Cfr9I	CCCGGG	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	5 cut(s)	92, 105, 125, 152, 188
CviKI_1	RGCY	5 cut(s)	92, 105, 125, 152, 188
DdeI	CTNAG	2 cut(s)	57, 177
DpnI	GATC	3 cut(s)	45, 236, 266
DpnII	GATC	3 cut(s)	43, 234, 264
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	103
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	81, 168
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	123, 280
Fsp4HI	GCNGC	2 cut(s)	123, 280
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	123, 280
HaeIII	GGCC	2 cut(s)	92, 105
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	150
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	118, 239
Hpy188III	TCNNGA	3 cut(s)	131, 196, 268
HpyAV	CCTTC	2 cut(s)	93, 193
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	2 cut(s)	69, 156
HpyCH4V	TGCA	4 cut(s)	9, 122, 257, 279
HpyF3I	CTNAG	2 cut(s)	57, 177
HpySE526I	ACGT	2 cut(s)	69, 156
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	43, 234, 264
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	3 cut(s)	61, 243, 253
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	2 cut(s)	69, 156
MalI	GATC	3 cut(s)	45, 236, 266
MboI	GATC	3 cut(s)	43, 234, 264
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	1 cut(s)	289
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	3 cut(s)	159, 288, 292
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 49
Mva1269I	GAATGC	1 cut(s)	259
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	3 cut(s)	43, 234, 264
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	45, 104
PacI	TTAATTAA	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	124, 281
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	45, 104
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	159, 288, 292
SatI	GCNGC	2 cut(s)	123, 280
Sau3AI	GATC	3 cut(s)	43, 234, 264
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	48, 49
SetI	ASST	6 cut(s)	72, 127, 154, 159, 178, 190
SfaNI	GCATC	1 cut(s)	109
SmaI	CCCGGG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	46, 47
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	2 cut(s)	72, 159
TasI	AATT	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	159, 288, 292
Tru9I	TTAA	3 cut(s)	159, 288, 292
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	122, 279
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	47
TspRI	CASTG	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	288
XmaI	CCCGGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.