RchiOBHm_Chr5g0005831

Transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
3683322 .. 3683879
558 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGCAGGTCCATATTGATGCTAACCTACCAAATAGATTGAGCAATAAGCACTTATTCGTGCAAAATATAGATTATGGTCTTGACTTGTTTCTGATATATGCACTGACCTACTCAATATTCCCCAGTTTCATGTTCGAAAATACTGGAGAACATCAGTTAGGCTCATGGGACCTGAGAAAAATGCCTTGGGGAACACTCTTGTGCTGTGTCTTTTGTCTGGCATATTTGTACGTGGGGGGTTGCCTTGGCTGGTTATGGCTCATTGTTAAAGACACATTTTAA

Protein Analysis

93

Amino Acids

10.84

Weight (kDa)

5.76

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AleI CACNNNNGTG 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 7, 169
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 2 cut(s) 7, 169
Bme18I GGWCC 2 cut(s) 7, 169
BmgT120I GGNCC 2 cut(s) 7, 169
BmiI GGNNCC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 185, 244
Bse1I ACTGG 2 cut(s) 123, 148
BseDI CCNNGG 2 cut(s) 185, 244
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 123, 148
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 123, 148
BssECI CCNNGG 2 cut(s) 185, 244
BssT1I CCWWGG 2 cut(s) 185, 244
BstBAI YACGTR 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 7, 169
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 130, 165
CviJI RGCY 3 cut(s) 162, 249, 259
CviKI_1 RGCY 3 cut(s) 162, 249, 259
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 185, 244
Eco47I GGWCC 2 cut(s) 7, 169
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 185, 244
ErhI CCWWGG 2 cut(s) 185, 244
FaeI CATG 2 cut(s) 133, 168
FaiI YATR 9 cut(s) 12, 68, 75, 97, 99, 131, 166, 223, 256
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 129, 164
GsuI CTGGAG 1 cut(s) 165
Hin1II CATG 2 cut(s) 133, 168
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 4, 61, 101
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 133, 168
LpnPI CCDG 5 cut(s) 129, 136, 185, 203, 235
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 231
MseI TTAA 2 cut(s) 267, 280
MslI CAYNNNNRTG 2 cut(s) 15, 199
NlaIII CATG 2 cut(s) 133, 168
NlaIV GGNNCC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 7, 169
PspPPI RGGWCCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 15, 199
SaqAI TTAA 2 cut(s) 267, 280
Sau96I GGNCC 2 cut(s) 7, 169
SetI ASST 5 cut(s) 9, 27, 110, 174, 234
SfaNI GCATC 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 2 cut(s) 7, 169
SmiMI CAYNNNNRTG 2 cut(s) 15, 199
SspI AATATT 1 cut(s) 117
StyI CCWWGG 2 cut(s) 185, 244
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 135
Tru1I TTAA 2 cut(s) 267, 280
Tru9I TTAA 2 cut(s) 267, 280
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 7, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.