RchiOBHm_Chr5g0005921

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
3717955 .. 3718745
791 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGAAGCTTTGCATTTATTGCTGTTCCAAAATCAATTATGCACAGAAATTTTTGAAAACTTTGAAGAGACACCAGTAGCATCTGGGAGTATTGCTCAAGTGCATCGGGCTACTTTGAAATTTCGATACCCTGGTCAACGGGTGAAGCCCATAGTAGTTGCAGTTAAGGTTAGACATCCTGGTGTTGGTGAATCAATTAGGAGAGATTTTGTAATAATCAATTTAGTAGCAAAAATGTCAAAGTTCATTCCTGCTTTAAAGTGGTGGAGATTGGATGAAAGTGTACAACAGTTTTCAGTTTTTATGATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTTTACTTATAATTTTCGTAGATGGAAGGATGTCTCTTTCCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.49

Weight (kDa)

9.92

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 14 - 132 2.2e-24 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AciI CCGC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 48, 119
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 185, 328
AgsI TTSAA 3 cut(s) 56, 65, 118
AjnI CCWGG 2 cut(s) 130, 178
AluBI AGCT 2 cut(s) 8, 335
AluI AGCT 2 cut(s) 8, 335
Alw26I GTCTC 3 cut(s) 62, 315, 388
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 48, 119
AsuHPI GGTGA 2 cut(s) 154, 200
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 132, 180
BciVI GTATCC 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 62, 315, 388
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 2 cut(s) 336, 349
BlsI GCNGC 2 cut(s) 337, 350
Bme1390I CCNGG 2 cut(s) 132, 180
BmrFI CCNGG 2 cut(s) 132, 180
BmsI GCATC 3 cut(s) 89, 112, 424
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpuEI CTTGAG 2 cut(s) 81, 297
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 328
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 132, 180
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 4 cut(s) 175, 280, 385, 415
BseLI CCNNNNNNNGG 2 cut(s) 185, 328
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 185, 328
BsmAI GTCTC 3 cut(s) 62, 315, 388
Bsp1407I TGTACA 1 cut(s) 283
BspACI CCGC 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 132, 180
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 283
BstF5I GGATG 4 cut(s) 175, 280, 385, 415
BstMAI GTCTC 3 cut(s) 62, 315, 388
BstMWI GCNNNNNNNGC 2 cut(s) 19, 332
BstNI CCWGG 2 cut(s) 132, 180
BstSCI CCNGG 2 cut(s) 130, 178
BstV1I GCAGC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 414
BtsCI GGATG 4 cut(s) 175, 280, 385, 415
Csp6I GTAC 1 cut(s) 284
CviJI RGCY 6 cut(s) 8, 110, 148, 335, 348, 397
CviKI_1 RGCY 6 cut(s) 8, 110, 148, 335, 348, 397
CviQI GTAC 1 cut(s) 284
DraI TTTAAA 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 130, 178
FaiI YATR 4 cut(s) 40, 152, 305, 360
FalI AAGNNNNNCTT 2 cut(s) 306, 338
Fnu4HI GCNGC 2 cut(s) 336, 349
FokI GGATG 4 cut(s) 162, 287, 392, 402
Fsp4HI GCNGC 2 cut(s) 336, 349
GluI GCNGC 2 cut(s) 336, 349
HincII GTYRAC 2 cut(s) 137, 319
HindII GTYRAC 2 cut(s) 137, 319
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 1 cut(s) 191
HphI GGTGA 2 cut(s) 154, 200
Hpy166II GTNNAC 3 cut(s) 137, 284, 319
Hpy8I GTNNAC 3 cut(s) 137, 284, 319
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 6 cut(s) 13, 42, 103, 161, 326, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 332
LpnPI CCDG 7 cut(s) 69, 87, 117, 144, 165, 192, 264
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 3 cut(s) 89, 112, 424
MboII GAAGA 1 cut(s) 77
MluCI AATT 7 cut(s) 35, 48, 119, 195, 220, 340, 361
MseI TTAA 2 cut(s) 165, 257
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 132, 180
MvaI CCWGG 2 cut(s) 132, 180
MwoI GCNNNNNNNGC 2 cut(s) 19, 332
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 337, 350
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 130, 178
PspGI CCWGG 2 cut(s) 130, 178
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 2 cut(s) 165, 257
SatI GCNGC 2 cut(s) 336, 349
ScrFI CCNGG 2 cut(s) 132, 180
SetI ASST 4 cut(s) 10, 171, 324, 337
SfaNI GCATC 3 cut(s) 89, 112, 424
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 96, 312
SmoI CTYRAG 2 cut(s) 96, 312
Sse9I AATT 7 cut(s) 35, 48, 119, 195, 220, 340, 361
SsiI CCGC 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 130, 178
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 124
TasI AATT 7 cut(s) 35, 48, 119, 195, 220, 340, 361
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 165, 257
Tru9I TTAA 2 cut(s) 165, 257
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 235, 291
XapI RAATTY 2 cut(s) 48, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.