RchiOBHm_Chr5g0005961

50S ribosomal protein L21

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
3728833 .. 3729651
819 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGAGGACAGTCAAGACGACGACGACGACGAAATTGGGTACAGTAGTGACGACGGGAGTTTATCCAAGGGTGGTGGGTCGAAAAGAGAGTACACGGCGGAGGAGATGGCGGCGGAGGCGGCGGGTATTGGGGTACAAAGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGCCCTATGAACCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGCGGACTCCATTTTCACTGAAAGATTGAAATTTTGCGAGGTCAAGTGCATTTATCATTGTGTGTTTTAG

Protein Analysis

102

Amino Acids

11.88

Weight (kDa)

10.47

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 97, 109, 112, 118, 121, 149, 242
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 3 cut(s) 40, 91, 134
AgsI TTSAA 3 cut(s) 178, 229, 268
AoxI GGCC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 2 cut(s) 99, 161
BceAI ACGGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 110, 119, 149
BlsI GCNGC 3 cut(s) 111, 120, 150
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 148
BsnI GGCC 1 cut(s) 148
BspACI CCGC 7 cut(s) 97, 109, 112, 118, 121, 149, 242
BspANI GGCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 10, 43
BstMWI GCNNNNNNNGC 2 cut(s) 115, 118
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 39, 90, 133
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviJI RGCY 2 cut(s) 148, 181
CviKI_1 RGCY 2 cut(s) 148, 181
CviQI GTAC 3 cut(s) 39, 90, 133
EciI GGCGGA 2 cut(s) 112, 127
Eco130I CCWWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaiI YATR 1 cut(s) 186
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 110, 119, 149
Fsp4HI GCNGC 3 cut(s) 110, 119, 149
GluI GCNGC 3 cut(s) 110, 119, 149
HaeIII GGCC 1 cut(s) 148
HinfI GANTC 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 5 cut(s) 22, 25, 28, 31, 55
HpyCH4III ACNGT 2 cut(s) 10, 43
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 118
LweI GCATC 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 46
MboII GAAGA 1 cut(s) 169
MluCI AATT 2 cut(s) 32, 269
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 3 cut(s) 93, 108, 271
MwoI GCNNNNNNNGC 2 cut(s) 115, 118
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 26
PkrI GCNGC 3 cut(s) 111, 120, 150
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 3 cut(s) 40, 91, 134
RsaNI GTAC 3 cut(s) 39, 90, 133
SatI GCNGC 3 cut(s) 110, 119, 149
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 239
SetI ASST 1 cut(s) 282
SfaNI GCATC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 32, 269
SsiI CCGC 7 cut(s) 97, 109, 112, 118, 121, 149, 242
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 2 cut(s) 10, 43
TaqI TCGA 1 cut(s) 79
TasI AATT 2 cut(s) 32, 269
TatI WGTACW 1 cut(s) 89
TauI GCSGC 3 cut(s) 112, 121, 151
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 262
XapI RAATTY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.