Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5123021 .. 5125615

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGAGCCATCGTCCAGCGCGTCCCCTCCGCCAGCGTCGAGGTCGAAGGCCGCATCGTCTCAACCATTGGGCCGGGCCTACTCGTCCTTGTCGGGCTTCACGAGTCCGATTCCGGCTCCGATGCCGAGTACATATGCCGGAAGGTAATGCAGAGGAACTATGAAGTGTTACTAGTGAGTCAATTTACATTGTATGGAATCCTCAAGGGTAACAAGCCTGATTTTCATGTGGCCATGGCGCCGGATAAAGCAAAGCCCTTTTACGCTTCGTTGGTTGAGAGTTTTAGAAAATCCTACAAGCCGGATGCAATAAAAGGTGAAATTATTTTCATGTTTTCTTGGCCTATTTCCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

8.58

Isoelectric Point (pI)

21.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	2 - 51	1.4e-12	D-Tyr-tRNA(Tyr) deacylase
Tyr_Deacylase	PF02580	48 - 106	8.8e-15	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	30, 52
AcoI	YGGCCR	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	131
AhlI	ACTAGT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	5 cut(s)	49, 71, 76, 231, 341
AspLEI	GCGC	2 cut(s)	21, 241
AspS9I	GGNCC	2 cut(s)	71, 76
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	101
BccI	CCATC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	71, 76
BmiI	GGNNCC	2 cut(s)	118, 240
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	63, 112, 295
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	5 cut(s)	51, 73, 78, 233, 343
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	5 cut(s)	74, 114, 139, 242, 302
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	5 cut(s)	51, 73, 78, 233, 343
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	2 cut(s)	30, 52
BspANI	GGCC	5 cut(s)	51, 73, 78, 233, 343
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	118, 240
BspT107I	GGYRCC	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	21, 241
BstMAI	GTCTC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	51, 73, 78, 233, 343
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	21, 241
Cfr13I	GGNCC	2 cut(s)	71, 76
CseI	GACGC	2 cut(s)	10, 25
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	227, 235, 331
CviQI	GTAC	1 cut(s)	130
DinI	GGCGCC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	3 cut(s)	230, 238, 334
FaiI	YATR	7 cut(s)	134, 136, 162, 195, 228, 236, 332
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	3 cut(s)	226, 234, 330
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	20, 240
GluI	GCNGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	51, 73, 78, 233, 343
HapII	CCGG	5 cut(s)	74, 114, 139, 242, 302
HgaI	GACGC	2 cut(s)	10, 25
HhaI	GCGC	2 cut(s)	21, 241
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	230, 238, 334
Hin6I	GCGC	2 cut(s)	19, 239
HinP1I	GCGC	2 cut(s)	19, 239
HinfI	GANTC	4 cut(s)	104, 110, 178, 198
HpaII	CCGG	5 cut(s)	74, 114, 139, 242, 302
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	109, 121
Hpy188III	TCNNGA	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	41, 136
HpyCH4V	TGCA	2 cut(s)	151, 308
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	230, 238, 334
HspAI	GCGC	2 cut(s)	19, 239
KasI	GGCGCC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	29, 46, 87, 127, 152, 231, 255, 315
LweI	GCATC	3 cut(s)	63, 112, 295
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	168, 209
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	2 cut(s)	182, 321
MluNI	TGGCCA	1 cut(s)	233
Mly113I	GGCGCC	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	113, 187
MnlI	CCTC	4 cut(s)	34, 37, 147, 212
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	5 cut(s)	74, 114, 139, 242, 302
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	134
NlaIII	CATG	3 cut(s)	230, 238, 334
NlaIV	GGNNCC	2 cut(s)	118, 240
NmeAIII	GCCGAG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 99
PfeI	GAWTC	2 cut(s)	110, 198
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	2 cut(s)	112, 186
PluTI	GGCGCC	1 cut(s)	242
PpsI	GAGTC	2 cut(s)	112, 186
PspN4I	GGNNCC	2 cut(s)	118, 240
PspPI	GGNCC	2 cut(s)	71, 76
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	71, 76
SchI	GAGTC	2 cut(s)	113, 187
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	3 cut(s)	45, 147, 319
SfaNI	GCATC	3 cut(s)	63, 112, 295
SfoI	GGCGCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	2 cut(s)	182, 321
SsiI	CCGC	2 cut(s)	30, 52
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	2 cut(s)	39, 45
TasI	AATT	2 cut(s)	182, 321
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	110, 198
TspDTI	ATGAA	3 cut(s)	177, 215, 319
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.