RchiOBHm_Chr5g0009551

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
6335505 .. 6335725
221 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGAAGTTGATCCTGTACACCCTTTGCTGTGTTTCAGTAGTTCATTCTCAATCAAGTTACAGACTCACGAAGCTCGAGCTTTTGATGCCTTGGAAAACGAAGGAATTTGGCAGTGGGTTGACATTCGTCAAACGCTATTTGACCTCTTTGAGCGATTGTGACGCAATTTGTTTCAAAACTTGA

Protein Analysis

60

Amino Acids

6.9

Weight (kDa)

9.05

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 2 cut(s) 73, 79
AluI AGCT 2 cut(s) 73, 79
AlwI GGATC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 74
ApoI RAATTY 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 74
BmsI GCATC 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 1 cut(s) 9
BspPI GGATC 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 15
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstPAI GACNNNNGTC 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 2 cut(s) 73, 79
CviKI_1 RGCY 2 cut(s) 73, 79
CviQI GTAC 1 cut(s) 16
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 18, 120
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 18, 120
HpyAV CCTTC 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 1 cut(s) 26
LweI GCATC 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 56, 158
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MluCI AATT 2 cut(s) 104, 165
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 74
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PshAI GACNNNNGTC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 74
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 57
SetI ASST 3 cut(s) 75, 81, 146
SfaNI GCATC 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 74
SgeI CNNG 6 cut(s) 25, 66, 79, 86, 88, 102
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 104, 165
StyI CCWWGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 104, 165
TatI WGTACW 1 cut(s) 15
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 17, 32
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.