RchiOBHm_Chr5g0013611

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
9149067 .. 9150359
1293 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGATGGTAATGGAGAGCTTGGAACATGCAATGAAACGAGGTGCACCTATTATTGCCGAGTACCTGGGAGGTGCTATTAACTGTGATGCGTATCATATGACTGATCCAAGAGTTGATGGACTTGGTGTATCTACATGCATAGAGAGAAGCCTTAAAGATGCTGGTGTGTCACCTGAAGAGGTTAACTACATCAATGCTCATGCAACTTCAACTCTATTGGGTGACCTGGCTGAGGTTAATGCTATAAAGAAAGTGTTCAAGAACACTAAAAAGATAAAAATCAATGCTACTAAGGTCACTCCCTCGGTGCTTCTGTGGGTTTGGAAGCTATTGCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

7.78

Isoelectric Point (pI)

26.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ketoacyl-synt_C PF02801 19 - 98 7.7e-22 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 210, 259
AjnI CCWGG 2 cut(s) 63, 225
AluBI AGCT 2 cut(s) 18, 328
AluI AGCT 2 cut(s) 18, 328
Alw21I GWGCWC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 98
ApaLI GTGCAC 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 162, 233
BaeGI GKGCMC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 65, 227
BfmI CTRYAG 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 65, 227
BmrFI CCNGG 2 cut(s) 65, 227
BmsI GCATC 2 cut(s) 76, 148
Bpu10I CCTNAGC 1 cut(s) 231
BsaBI GATNNNNATC 2 cut(s) 90, 278
BsaJI CCNNGG 2 cut(s) 64, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 90, 278
BseBI CCWGG 2 cut(s) 65, 227
BseDI CCNNGG 2 cut(s) 64, 303
BseJI GATNNNNATC 2 cut(s) 90, 278
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 64, 303
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 65, 227
Bst4CI ACNGT 2 cut(s) 83, 339
Bst6I CTCTTC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 231, 291
BstEII GGTNACC 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 230
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 65, 227
BstNSI RCATGY 2 cut(s) 29, 138
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 63, 225
BstSFI CTRYAG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 26, 135, 200
CviJI RGCY 4 cut(s) 18, 150, 230, 328
CviKI_1 RGCY 4 cut(s) 18, 150, 230, 328
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 231, 291
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 63, 225
EcoT22I ATGCAT 1 cut(s) 140
FaeI CATG 3 cut(s) 29, 138, 203
FaiI YATR 7 cut(s) 27, 96, 98, 136, 140, 201, 245
FatI CATG 3 cut(s) 25, 134, 199
FauNDI CATATG 1 cut(s) 96
Hin1II CATG 3 cut(s) 29, 138, 203
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaI GTTAAC 1 cut(s) 184
HphI GGTGA 2 cut(s) 162, 233
Hpy166II GTNNAC 2 cut(s) 44, 184
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 44, 184
HpyCH4III ACNGT 2 cut(s) 83, 339
HpyCH4V TGCA 4 cut(s) 29, 44, 138, 203
HpyF3I CTNAG 2 cut(s) 231, 291
Hsp92II CATG 3 cut(s) 29, 138, 203
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 50, 77, 147, 186, 212, 239
LweI GCATC 2 cut(s) 76, 148
MaeIII GTNAC 3 cut(s) 168, 221, 295
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 46
MnlI CCTC 5 cut(s) 32, 62, 172, 226, 313
Mph1103I ATGCAT 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 4 cut(s) 78, 153, 183, 237
MspR9I CCNGG 2 cut(s) 65, 227
MvaI CCWGG 2 cut(s) 65, 227
NdeI CATATG 1 cut(s) 96
NdeII GATC 1 cut(s) 103
NlaIII CATG 3 cut(s) 29, 138, 203
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 3 cut(s) 168, 221, 295
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 2 cut(s) 29, 138
PdmI GAANNNNTTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 63, 225
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 63, 225
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 4 cut(s) 78, 153, 183, 237
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 65, 227
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 76, 148
SfcI CTRYAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 63, 225
TaaI ACNGT 2 cut(s) 83, 339
Tru1I TTAA 4 cut(s) 78, 153, 183, 237
Tru9I TTAA 4 cut(s) 78, 153, 183, 237
TseFI GTSAC 3 cut(s) 168, 221, 295
Tsp45I GTSAC 3 cut(s) 168, 221, 295
TspDTI ATGAA 1 cut(s) 47
VneI GTGCAC 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 230
XceI RCATGY 2 cut(s) 29, 138
XmnI GAANNNNTTC 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.