RchiOBHm_Chr5g0013901

mRNA 5'-UTR binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030238
Physical Location & Seq
Reverse (-)
9437024 .. 9440216
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGAAGGGGTATGGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTATGACATGCAAGGAATTGCGTATTACTGCTCTTCATATTAAGTTGTGGGCAACGGGTGGCAACAAAACTAAGACACCTGGCCCTGGTACCCAGTCTGCACTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTGTTGAGGATGTGACTCCAATTCCTGCCGATAACACCAGTAGAAAGGGTGGTAGAAGAGGAAGAAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000122 GO:0000184 GO:0000462 GO:0000956 GO:0002181 GO:0002262 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030490 GO:0030684 GO:0030686 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032040 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034101 GO:0034248 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045182 GO:0045184 GO:0045892 GO:0045934 GO:0046483 GO:0046700 GO:0046907 GO:0048027 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

10.67

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 7 - 86 1.4e-23 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030238)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0013901
rosa_samantha Rh5CG116000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 146
AjnI CCWGG 2 cut(s) 139, 145
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 172
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 35, 47
Asp718I GGTACC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 47, 59
BciT130I CCWGG 2 cut(s) 141, 147
BisI GCNGC 2 cut(s) 36, 48
BlsI GCNGC 2 cut(s) 37, 49
Bme1390I CCNGG 2 cut(s) 141, 147
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 141, 147
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 154, 237
BseBI CCWGG 2 cut(s) 141, 147
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 3 cut(s) 22, 61, 214
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 154, 237
BseXI GCAGC 2 cut(s) 47, 59
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 172
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 154, 237
BssECI CCNNGG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 141, 147
Bst6I CTCTTC 2 cut(s) 99, 250
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 22, 61, 214
BstMWI GCNNNNNNNGC 2 cut(s) 44, 167
BstNI CCWGG 2 cut(s) 141, 147
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 139, 145
BstV1I GCAGC 2 cut(s) 47, 59
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 3 cut(s) 22, 61, 214
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 69
CviJI RGCY 3 cut(s) 38, 144, 268
CviKI_1 RGCY 3 cut(s) 38, 144, 268
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 167
Eam1104I CTCTTC 2 cut(s) 99, 250
EarI CTCTTC 2 cut(s) 99, 250
EcoRII CCWGG 2 cut(s) 139, 145
FaeI CATG 1 cut(s) 72
FaiI YATR 6 cut(s) 12, 31, 41, 65, 70, 99
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 36, 48
FokI GGATG 3 cut(s) 29, 68, 221
Fsp4HI GCNGC 2 cut(s) 36, 48
GluI GCNGC 2 cut(s) 36, 48
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 72
HinfI GANTC 2 cut(s) 20, 214
Hpy188III TCNNGA 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 47, 72, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 167
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 72
KpnI GGTACC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 9 cut(s) 38, 126, 132, 153, 159, 167, 168, 237, 250
Lsp1109I GCAGC 2 cut(s) 47, 59
MaeIII GTNAC 1 cut(s) 211
MboII GAAGA 4 cut(s) 15, 86, 267, 273
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 3 cut(s) 77, 192, 219
MlyI GAGTC 2 cut(s) 29, 208
MnlI CCTC 2 cut(s) 199, 251
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 141, 147
MvaI CCWGG 2 cut(s) 141, 147
MwoI GCNNNNNNNGC 2 cut(s) 44, 167
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 37, 49
PleI GAGTC 2 cut(s) 28, 208
PpsI GAGTC 2 cut(s) 28, 208
Psp6I CCWGG 2 cut(s) 139, 145
PspGI CCWGG 2 cut(s) 139, 145
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 143
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 36, 48
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 2 cut(s) 29, 208
ScrFI CCNGG 2 cut(s) 141, 147
SduI GDGCHC 1 cut(s) 172
SetI ASST 2 cut(s) 40, 142
Sse9I AATT 3 cut(s) 77, 192, 219
StyD4I CCNGG 2 cut(s) 139, 145
TasI AATT 3 cut(s) 77, 192, 219
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 35, 47
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 17, 86
TspGWI ACGGA 1 cut(s) 155
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.