Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10105820 .. 10109829

Gene Structure 4010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTTGGCTTTGCAGGTCTGTCAAAGATGTGTTTTCTGCAATTGCTCCTGCAGTGGGCTTGTCGGTTGGTCTTGCAGTTGGGCAATCTTCGATTGCCAATGAGATTTCAGAACTTATTGATAAGCCTAAGCTTGAGTTTGGCGTTTGTTTTGACCGAGAGGATCGTGCGCCTCAATTACGTAGTGCGGTGGATATATTGGTGGCTACCCCTGGAAGGCTAATGGACCATATCAATAACACTAAGGGATTTACGCTTGAGCATCTCTGTTATCTTGTTGTTGATGAAACAGATCAATTACTCAGGGAGGCATACCAGAATTGGCTACCCACTGTGCTTCAATTAACTCGCTTTGATGATGATAGTTTATTTCCTCGTGCTCAAAATTTTCTACCTTCAGCATTTGGTTCCTTCAGAACCATAAGGAGATTTGGTCTTGAGAGGGGGTTTAGGGGTACACCTTACCCCAGGCTTGTGAAGATTTCAATGGCTACTCCGACTCAAGTTTGCAACTCAGATCCTGTTCGTCTTGATGAAACCAATTACCCAGCTTGGTTATATCTGATGCAACATCGTATTAGAGGGTATGGTTTACTCAAAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

202

Amino Acids

22.94

Weight (kDa)

6.83

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	32 - 123	7.2e-11	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	6
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	171, 512
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	381, 397
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	56, 216
AgsI	TTSAA	2 cut(s)	341, 486
AjnI	CCWGG	2 cut(s)	211, 467
AluBI	AGCT	2 cut(s)	133, 551
AluI	AGCT	2 cut(s)	133, 551
Alw21I	GWGCWC	1 cut(s)	382
AlwI	GGATC	2 cut(s)	171, 512
AlwNI	CAGNNNCTG	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	213, 469
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	213, 469
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	213, 469
BmsI	GCATC	2 cut(s)	271, 555
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	4 cut(s)	155, 278, 458, 486
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	211, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 216
BseBI	CCWGG	2 cut(s)	213, 469
BseDI	CCNNGG	2 cut(s)	211, 467
BseLI	CCNNNNNNNGG	2 cut(s)	56, 216
BseMII	CTCAG	2 cut(s)	316, 528
BseYI	CCCAGC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	56, 216
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	163, 292, 517
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	315, 527
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	171, 512
BssECI	CCNNGG	2 cut(s)	211, 467
BssMI	GATC	3 cut(s)	163, 292, 517
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	213, 469
Bst4CI	ACNGT	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	129, 243, 302, 514
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	166, 295, 520
BstMBI	GATC	3 cut(s)	163, 292, 517
BstNI	CCWGG	2 cut(s)	213, 469
BstSCI	CCNGG	2 cut(s)	211, 467
BstSFI	CTRYAG	1 cut(s)	51
BstSNI	TACGTA	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 330
BveI	ACCTGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	456
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	129, 243, 302, 514
DpnI	GATC	3 cut(s)	165, 294, 519
DpnII	GATC	3 cut(s)	163, 292, 517
Eco105I	TACGTA	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	381, 397
EcoRII	CCWGG	2 cut(s)	211, 467
FaiI	YATR	6 cut(s)	197, 231, 313, 422, 559, 588
GlaI	GCGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	458, 593
Hpy188I	TCNGA	5 cut(s)	112, 416, 498, 517, 564
Hpy188III	TCNNGA	2 cut(s)	437, 530
Hpy8I	GTNNAC	2 cut(s)	458, 593
HpyAV	CCTTC	3 cut(s)	210, 405, 421
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	15, 41, 53, 77, 510, 568
HpyF3I	CTNAG	4 cut(s)	129, 243, 302, 514
HpySE526I	ACGT	1 cut(s)	181
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	163, 292, 517
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	63, 198, 225, 289, 329, 454, 481, 534, 561
LweI	GCATC	2 cut(s)	271, 555
MaeII	ACGT	1 cut(s)	181
MalI	GATC	3 cut(s)	165, 294, 519
MboI	GATC	3 cut(s)	163, 292, 517
MboII	GAAGA	2 cut(s)	81, 490
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	8 cut(s)	42, 176, 296, 319, 341, 385, 541, 600
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	6 cut(s)	154, 183, 301, 384, 435, 575
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	213, 469
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	213, 469
NdeII	GATC	3 cut(s)	163, 292, 517
NlaIV	GGNNCC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	211, 467
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	2 cut(s)	211, 467
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	344
Sau3AI	GATC	3 cut(s)	163, 292, 517
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	213, 469
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	6 cut(s)	20, 135, 184, 397, 463, 553
SfaNI	GCATC	2 cut(s)	271, 555
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	4 cut(s)	134, 257, 437, 501
SmoI	CTYRAG	4 cut(s)	134, 257, 437, 501
SnaBI	TACGTA	1 cut(s)	182
Sse9I	AATT	8 cut(s)	42, 176, 296, 319, 341, 385, 541, 600
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	211, 467
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	8 cut(s)	42, 176, 296, 319, 341, 385, 541, 600
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	2 cut(s)	60, 337
TspDTI	ATGAA	2 cut(s)	300, 549
TspRI	CASTG	2 cut(s)	60, 337
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.