Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10109831 .. 10110303

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGTAGAGAAGACGGTAAGCGAATTCGGAAACCAACAGAAGAACACGAAAAGCCAAAGAGCATACCAGTCCTGCGATGGATGCGAACCCCAATTGACGTCAGCGCCTCGGACGAAAAACCCCTTTCTCTTCTGCCTCGCCTTGACCCCAGGTTGAAGGAGGCTTTGGAGAAGATGAAAATCTCATCCCTTTACCCAGTTCAGCTTGCTGTTTGGGAAGAGACTATTGGGCCTGGTGGGTTTCAGCGTGACTTGTGTGTTAATTCACCTACTGGAAGTGGGAAAACTCTGGCTTATGCTTTGCCAATTGTGCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

106

Amino Acids

11.86

Weight (kDa)

9.16

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	66 - 105	6.4e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	149, 232
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 210, 242
AluBI	AGCT	2 cut(s)	205, 317
AluI	AGCT	2 cut(s)	205, 317
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	18
BccI	CCATC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	151, 234
BcoDI	GTCTC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	151, 234
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	151, 234
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	108, 149
Bse1I	ACTGG	3 cut(s)	68, 197, 277
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	151, 234
BseDI	CCNNGG	2 cut(s)	108, 149
BseGI	GGATG	2 cut(s)	87, 185
BseJI	GATNNNNATC	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	68, 197, 277
BshFI	GGCC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	68, 197, 277
BssECI	CCNNGG	2 cut(s)	108, 149
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	151, 234
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	135, 213
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	207, 315
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	87, 185
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 310
BstNI	CCWGG	2 cut(s)	151, 234
BstSCI	CCNGG	2 cut(s)	149, 232
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	87, 185
Cac8I	GCNNGC	2 cut(s)	207, 315
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	230
CviJI	RGCY	6 cut(s)	55, 164, 205, 232, 293, 317
CviKI_1	RGCY	6 cut(s)	55, 164, 205, 232, 293, 317
DdeI	CTNAG	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	135, 213
EarI	CTCTTC	2 cut(s)	135, 213
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	149, 232
FaiI	YATR	2 cut(s)	65, 297
FokI	GGATG	2 cut(s)	94, 172
GlaI	GCGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	315
HphI	GGTGA	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	30, 112
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 310
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
HspAI	GCGC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	81, 86, 136, 163, 210, 219, 246, 258, 275
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	5 cut(s)	23, 53, 122, 184, 230
MfeI	CAATTG	2 cut(s)	93, 306
MluCI	AATT	4 cut(s)	24, 93, 262, 306
MnlI	CCTC	3 cut(s)	118, 147, 154
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	151, 234
MunI	CAATTG	2 cut(s)	93, 306
MvaI	CCWGG	2 cut(s)	151, 234
MwoI	GCNNNNNNNGC	2 cut(s)	82, 310
NmuCI	GTSAC	1 cut(s)	248
Psp6I	CCWGG	2 cut(s)	149, 232
PspGI	CCWGG	2 cut(s)	149, 232
PspPI	GGNCC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	151, 234
SetI	ASST	5 cut(s)	102, 155, 207, 271, 319
SfaNI	GCATC	1 cut(s)	72
Sse9I	AATT	4 cut(s)	24, 93, 262, 306
StyD4I	CCNGG	2 cut(s)	149, 232
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	102
TasI	AATT	4 cut(s)	24, 93, 262, 306
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	191
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.