RchiOBHm_Chr5g0014871

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030206
Physical Location & Seq
Reverse (-)
10275673 .. 10276971
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGGCGAGGTTTGGGATTTGCAATATAGGGTTTCGAAGCGTCGTCGTTCAATGGCTCTGGCCAAGGTCCAGGAGATCGTCTCGGCCAATCCGGTCGTCATCTTCAGCGAGAGGTATGAGTCCTACAGCGTGTGCGTGAAGCAGCTCTTCTTTCTAAAATTGGGAGCCCCTTACAAGGCTATTGATTTGGACGATGAGAGTGATGCAATTGAGATACATGCTGCACTTGCTAAGTGGACCGGACAGATGAGACTCCCCAGCGTATTCATCGGTGGAAAGCACATTGGTGATTGTCTCAAAACCTGGGATTTGCATCATGAAGGAAAGCTGGTCCCCCTGCTCACTGAAGCTCAAGTTGCCTGCCCTCTAGCTCAGGTTCTTACCGAAAGTCCTGAAGACGAATTTCCTCAACCAACCCTAGAAAAAAGAAAGAGTTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

147

Amino Acids

16.64

Weight (kDa)

5.83

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 32 - 95 7e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030206)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0014871
rosa_roxburghii Rroxscaffold_1G00061710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 60, 84
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 3 cut(s) 88, 366, 414
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 2 cut(s) 69, 302
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 4 cut(s) 145, 328, 350, 371
AluI AGCT 4 cut(s) 145, 328, 350, 371
Alw26I GTCTC 3 cut(s) 85, 244, 299
AoxI GGCC 2 cut(s) 60, 84
ApeKI GCWGC 2 cut(s) 142, 221
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 67, 237, 331
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 3 cut(s) 67, 237, 331
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 154, 208
BciT130I CCWGG 2 cut(s) 71, 304
BcoDI GTCTC 3 cut(s) 85, 244, 299
BfaI CTAG 2 cut(s) 368, 419
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 2 cut(s) 143, 222
BlsI GCNGC 2 cut(s) 144, 223
Bme1390I CCNGG 2 cut(s) 71, 304
Bme18I GGWCC 3 cut(s) 67, 237, 331
BmgT120I GGNCC 3 cut(s) 67, 237, 331
BmiI GGNNCC 2 cut(s) 166, 333
BmrFI CCNGG 2 cut(s) 71, 304
BmsI GCATC 2 cut(s) 193, 322
BpiI GAAGAC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 63, 303
BsaWI WCCGGW 2 cut(s) 91, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 2 cut(s) 71, 304
BseDI CCNNGG 2 cut(s) 63, 303
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 154, 208
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 62, 86
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 92, 240
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 85, 244, 299
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 62, 86
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 75
BspANI GGCC 2 cut(s) 62, 86
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 166, 333
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 63, 303
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 71, 304
Bst6I CTCTTC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 231, 372
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 3 cut(s) 85, 244, 299
BstMBI GATC 1 cut(s) 75
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 227, 356
BstNI CCWGG 2 cut(s) 71, 304
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 69, 302
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 154, 208
BstV2I GAAGAC 1 cut(s) 402
BsuRI GGCC 2 cut(s) 62, 86
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 67, 237, 331
CseI GACGC 1 cut(s) 29
CviAII CATG 2 cut(s) 218, 317
CviJI RGCY 9 cut(s) 56, 62, 86, 145, 167, 179, 328, 350, 371
CviKI_1 RGCY 9 cut(s) 56, 62, 86, 145, 167, 179, 328, 350, 371
DdeI CTNAG 2 cut(s) 231, 372
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EaeI YGGCCR 2 cut(s) 60, 84
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 3 cut(s) 67, 237, 331
Eco57I CTGAAG 3 cut(s) 88, 366, 414
EcoRII CCWGG 2 cut(s) 69, 302
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 221, 320
FaiI YATR 4 cut(s) 27, 117, 219, 318
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 217, 316
Fnu4HI GCNGC 2 cut(s) 143, 222
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 143, 222
FspBI CTAG 2 cut(s) 368, 419
GluI GCNGC 2 cut(s) 143, 222
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 62, 86
HapII CCGG 2 cut(s) 92, 240
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 221, 320
HinfI GANTC 2 cut(s) 119, 252
HpaII CCGG 2 cut(s) 92, 240
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 317, 392
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 2 cut(s) 45, 48
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 22, 206, 224, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 356
HpyF3I CTNAG 2 cut(s) 231, 372
Hsp92II CATG 2 cut(s) 221, 320
Kzo9I GATC 1 cut(s) 75
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 154, 208
LweI GCATC 2 cut(s) 193, 322
MaeI CTAG 2 cut(s) 368, 419
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 94, 139, 407
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 158, 207, 401
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 128, 246
MnlI CCTC 3 cut(s) 105, 375, 417
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 2 cut(s) 92, 240
MspR9I CCNGG 2 cut(s) 71, 304
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 2 cut(s) 71, 304
MwoI GCNNNNNNNGC 2 cut(s) 227, 356
NdeII GATC 1 cut(s) 75
NlaIII CATG 2 cut(s) 221, 320
NlaIV GGNNCC 2 cut(s) 166, 333
NmeAIII GCCGAG 1 cut(s) 62
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 2 cut(s) 144, 223
PleI GAGTC 2 cut(s) 127, 246
PpsI GAGTC 2 cut(s) 127, 246
Psp6I CCWGG 2 cut(s) 69, 302
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 2 cut(s) 69, 302
PspN4I GGNNCC 2 cut(s) 166, 333
PspPI GGNCC 3 cut(s) 67, 237, 331
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 143, 222
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 3 cut(s) 67, 237, 331
SchI GAGTC 2 cut(s) 128, 246
ScrFI CCNGG 2 cut(s) 71, 304
SduI GDGCHC 1 cut(s) 169
SetI ASST 9 cut(s) 12, 69, 116, 147, 305, 330, 352, 373, 378
SfaNI GCATC 2 cut(s) 193, 322
SfcI CTRYAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 3 cut(s) 67, 237, 331
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 3 cut(s) 158, 207, 401
SspMI CTAG 2 cut(s) 368, 419
StyD4I CCNGG 2 cut(s) 69, 302
StyI CCWWGG 1 cut(s) 63
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 158, 207, 401
TscAI CASTG 1 cut(s) 349
TseI GCWGC 2 cut(s) 142, 221
TspDTI ATGAA 2 cut(s) 256, 333
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 67, 237, 331
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 221
XspI CTAG 2 cut(s) 368, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.