RchiOBHm_Chr5g0015211

Cancer-related

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
10521799 .. 10522476
678 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 123 bp
ATGATTCTAAATCTGATGCAGGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAGGGTTTCTACACCAATGAGGTTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

40

Amino Acids

4.53

Weight (kDa)

9.82

Isoelectric Point (pI)

3.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 6 - 40 2.6e-08 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 59
BmsI GCATC 1 cut(s) 6
HinfI GANTC 2 cut(s) 4, 91
Hpy188I TCNGA 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 19
LpnPI CCDG 3 cut(s) 5, 77, 80
LweI GCATC 1 cut(s) 6
MnlI CCTC 2 cut(s) 82, 106
MseI TTAA 1 cut(s) 86
PfeI GAWTC 2 cut(s) 4, 91
SaqAI TTAA 1 cut(s) 86
SetI ASST 1 cut(s) 117
SfaNI GCATC 1 cut(s) 6
SgeI CNNG 3 cut(s) 32, 76, 107
TfiI GAWTC 2 cut(s) 4, 91
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.