Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0015411 |
| rosa_samantha | Rh5CG130400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 73 |
| AflII | CTTAAG | 1 cut(s) | 101 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 3 cut(s) | 106, 178, 285 |
| AluI | AGCT | 3 cut(s) | 106, 178, 285 |
| Alw21I | GWGCWC | 1 cut(s) | 64 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApeKI | GCWGC | 1 cut(s) | 282 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 1 cut(s) | 258 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 56 |
| Bbv12I | GWGCWC | 1 cut(s) | 64 |
| BbvI | GCAGC | 1 cut(s) | 294 |
| BceAI | ACGGC | 1 cut(s) | 258 |
| BfrI | CTTAAG | 1 cut(s) | 101 |
| BisI | GCNGC | 1 cut(s) | 283 |
| BlsI | GCNGC | 1 cut(s) | 284 |
| BmgT120I | GGNCC | 1 cut(s) | 258 |
| BmrI | ACTGGG | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BmuI | ACTGGG | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 73 |
| Bse1I | ACTGG | 1 cut(s) | 78 |
| Bse3DI | GCAATG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 230 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BseMI | GCAATG | 1 cut(s) | 207 |
| BseNI | ACTGG | 1 cut(s) | 78 |
| BseXI | GCAGC | 1 cut(s) | 294 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BsiHKAI | GWGCWC | 1 cut(s) | 64 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 1 cut(s) | 259 |
| Bsp1286I | GDGCHC | 1 cut(s) | 64 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BspTI | CTTAAG | 1 cut(s) | 101 |
| BsrDI | GCAATG | 1 cut(s) | 207 |
| BsrI | ACTGG | 1 cut(s) | 78 |
| BstAFI | CTTAAG | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 287 |
| BstF5I | GGATG | 1 cut(s) | 230 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 282 |
| BstV1I | GCAGC | 1 cut(s) | 294 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BtsCI | GGATG | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 287 |
| Cfr13I | GGNCC | 1 cut(s) | 258 |
| CviAII | CATG | 3 cut(s) | 89, 197, 235 |
| CviJI | RGCY | 7 cut(s) | 56, 106, 111, 178, 245, 259, 285 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 106, 111, 178, 245, 259, 285 |
| EcoO109I | RGGNCCY | 1 cut(s) | 258 |
| EcoT22I | ATGCAT | 2 cut(s) | 142, 207 |
| FaeI | CATG | 3 cut(s) | 92, 200, 238 |
| FaiI | YATR | 6 cut(s) | 90, 125, 127, 129, 198, 236 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 95, 127 |
| FatI | CATG | 3 cut(s) | 88, 196, 234 |
| Fnu4HI | GCNGC | 1 cut(s) | 283 |
| FokI | GGATG | 1 cut(s) | 217 |
| Fsp4HI | GCNGC | 1 cut(s) | 283 |
| GluI | GCNGC | 1 cut(s) | 283 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| Hin1II | CATG | 3 cut(s) | 92, 200, 238 |
| HindIII | AAGCTT | 1 cut(s) | 104 |
| HphI | GGTGA | 2 cut(s) | 25, 56 |
| Hpy188I | TCNGA | 3 cut(s) | 121, 135, 210 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4V | TGCA | 7 cut(s) | 92, 140, 182, 200, 205, 265, 282 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 282 |
| Hsp92II | CATG | 3 cut(s) | 92, 200, 238 |
| LpnPI | CCDG | 1 cut(s) | 59 |
| Lsp1109I | GCAGC | 1 cut(s) | 294 |
| LweI | GCATC | 1 cut(s) | 214 |
| MboII | GAAGA | 1 cut(s) | 38 |
| MhlI | GDGCHC | 1 cut(s) | 64 |
| MmeI | TCCRAC | 1 cut(s) | 94 |
| MnlI | CCTC | 3 cut(s) | 5, 77, 249 |
| Mph1103I | ATGCAT | 2 cut(s) | 142, 207 |
| MroXI | GAANNNNTTC | 1 cut(s) | 191 |
| MseI | TTAA | 1 cut(s) | 102 |
| MspCI | CTTAAG | 1 cut(s) | 101 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 282 |
| NlaIII | CATG | 3 cut(s) | 92, 200, 238 |
| NsiI | ATGCAT | 2 cut(s) | 142, 207 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PdmI | GAANNNNTTC | 1 cut(s) | 191 |
| PkrI | GCNGC | 1 cut(s) | 284 |
| PspPI | GGNCC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 102 |
| SatI | GCNGC | 1 cut(s) | 283 |
| Sau96I | GGNCC | 1 cut(s) | 258 |
| SduI | GDGCHC | 1 cut(s) | 64 |
| SetI | ASST | 6 cut(s) | 16, 38, 69, 108, 180, 287 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SmlI | CTYRAG | 2 cut(s) | 50, 101 |
| SmoI | CTYRAG | 2 cut(s) | 50, 101 |
| Tru1I | TTAA | 1 cut(s) | 102 |
| Tru9I | TTAA | 1 cut(s) | 102 |
| TseI | GCWGC | 1 cut(s) | 282 |
| Vha464I | CTTAAG | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 191 |
| Zsp2I | ATGCAT | 2 cut(s) | 142, 207 |