RchiOBHm_Chr5g0015781

C-terminus of AA_permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
10941811 .. 10942128
318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGTTCTGTGCTCCTTGCAGTTGATTGTCAAACAAGCAAAGAAACCTAGACTTTGGGGGGTGCCATTGGTTCCTTGGTTGCCATCGGCTGTTATTGCAGTCAATATCTTCATCCTGGGATCCATTGATGGAGCTTTATACTTGAGATTCGATATTTGGACATTGGTTTTGCTGGTCTACTACATATTTGTGGCACTACATGCTTCATATGATGCAGCTCAGGAGACAAAGAGTATAGCTAATGCTGAAACAAACATGGAGGCTGGAACTAGCAAAACCGCTGAAGCAGGCTGTAAACAATTCAGAGATTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2 AA_permease_C

Protein Analysis

105

Amino Acids

11.62

Weight (kDa)

7.69

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_C PF13906 19 - 69 8e-15 C-terminus of AA_permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 177
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 114, 127
AcuI CTGAAG 1 cut(s) 303
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 3 cut(s) 134, 218, 239
AluI AGCT 3 cut(s) 134, 218, 239
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 114, 127
ApeKI GCWGC 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
BamHI GGATCC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 91, 122
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 48, 270
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 63, 72, 121
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 74, 115
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 74, 115
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 63, 72, 121
BspPI GGATC 2 cut(s) 114, 127
BspT107I GGYRCC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 74, 115
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 95, 200
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 289
CviAII CATG 2 cut(s) 200, 256
CviJI RGCY 6 cut(s) 89, 134, 218, 239, 263, 291
CviKI_1 RGCY 6 cut(s) 89, 134, 218, 239, 263, 291
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 203, 259
FaiI YATR 8 cut(s) 139, 185, 201, 208, 210, 236, 257, 314
FatI CATG 2 cut(s) 199, 255
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 48, 270
GluI GCNGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 203, 259
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 178, 296
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 178, 296
HpyCH4V TGCA 3 cut(s) 19, 98, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 200
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 2 cut(s) 203, 259
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 17, 131
LpnPI CCDG 6 cut(s) 101, 128, 158, 206, 249, 273
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 202
MaeI CTAG 2 cut(s) 48, 270
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 299
MnlI CCTC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 95, 200
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 119
NlaIII CATG 2 cut(s) 203, 259
NlaIV GGNNCC 3 cut(s) 63, 72, 121
NspI RCATGY 1 cut(s) 203
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 63, 72, 121
PsuI RGATCY 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 188
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 49, 136, 220, 241
SfaNI GCATC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 299
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 48, 270
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 299
TfiI GAWTC 1 cut(s) 147
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 100, 195
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 48, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.