RchiOBHm_Chr5g0017051

Uncharacterised protein family (UPF0183)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
11729706 .. 11731185
1480 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGTTCCCTACATTATTGAACTTCATATCTACTTTCAGAGGGCCATCCACTCTGGCGACTTTCATAGTTGTTTATGCCTTGTTTGGGCCAACATGTCCTGGAATTTATGATCAAGGTAGAGGTGATGTTTGGACTGAATTGGGCCATCCTTGTGGGATACATCAAAAGCAGGTGATGAAGAATGGTTACATTGCAACAGTGAGTCTCTTTCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.94

Weight (kDa)

7.83

Isoelectric Point (pI)

24.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 3 cut(s) 41, 86, 142
ApoI RAATTY 1 cut(s) 102
AspS9I GGNCC 3 cut(s) 41, 86, 142
AsuHPI GGTGA 2 cut(s) 134, 184
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BccI CCATC 2 cut(s) 52, 153
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 150
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 99
BmgT120I GGNCC 3 cut(s) 41, 86, 142
BmrFI CCNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 44, 145
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 189
BshFI GGCC 3 cut(s) 43, 88, 144
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 3 cut(s) 43, 88, 144
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 3 cut(s) 43, 88, 144
BspHI TCATGA 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 189
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 199
BstF5I GGATG 2 cut(s) 44, 145
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 43, 88, 144
BtsCI GGATG 2 cut(s) 44, 145
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 41, 86, 142
CviAII CATG 2 cut(s) 93, 216
CviJI RGCY 3 cut(s) 43, 88, 144
CviKI_1 RGCY 3 cut(s) 43, 88, 144
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 96, 219
FaiI YATR 6 cut(s) 26, 65, 75, 94, 108, 217
FatI CATG 2 cut(s) 92, 215
FbaI TGATCA 1 cut(s) 109
FokI GGATG 2 cut(s) 31, 132
HaeIII GGCC 3 cut(s) 43, 88, 144
Hin1II CATG 2 cut(s) 96, 219
HinfI GANTC 1 cut(s) 202
HphI GGTGA 2 cut(s) 134, 184
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 194
Hsp92II CATG 2 cut(s) 96, 219
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 38, 84, 111, 155
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 190
MluCI AATT 2 cut(s) 102, 137
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 32, 113
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 96, 219
NspI RCATGY 1 cut(s) 96
PagI TCATGA 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 160
PciI ACATGT 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 97
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 3 cut(s) 41, 86, 142
RseI CAYNNNNRTG 1 cut(s) 150
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 3 cut(s) 41, 86, 142
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 118, 124, 174
SgeI CNNG 8 cut(s) 65, 91, 105, 110, 111, 125, 162, 182
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 2 cut(s) 102, 137
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 199
TasI AATT 2 cut(s) 102, 137
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 13, 52, 191
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.