RchiOBHm_Chr5g0017961

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030203
Physical Location & Seq
Reverse (-)
12511756 .. 12512325
570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGAAGTTACCGAGTTCTTTAGCAGTCGTTCTCTTCATTCTCTCAACCCTTTGGCTCTCAACTACTTCAAATCCCATTCTCGAAAACTTCCTCAAATGCCTTCCAGAACAAACTCACTCCAACTACTCCATCTCTGAAGCCATTTACACCAGCCAAAATGCCACTTTTGAATCCGTTCTGCTGTCATACATCAGAAACGGCAGATATTTAACCCCTACAACTCCGAAACCATTGGCTATTGTAACAGCCAAGCATGAATCCCACGTGCAAGCAACTGTGATCTGTGCAAAGAGCCATGGCTTGCAGATTAGAATCCGAAGTGGAGGCCACGATTACGAGTGTCTATCTTACGTGTCACATGTCCCCTTTGTTATTCTTGACATGTTTCATCTCCGCGCCATTCATGTTGCGATGTCGCGGATGAGAGTGCTTGGGTTGAGTCTGTGGCTATTGTTGGTGAACTTTACTATGAAATCGCAAAGAACAGTAAAGTTCATGGGTTTTCAGCTGCAGCTGGTCCAACTGTCGGTGTTGGTGGTCACTTTAGTGGCGGTGGGTATGGTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

189

Amino Acids

21.16

Weight (kDa)

9.58

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 77 - 134 2.6e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0017961
rosa_multiflora Rmu_sc0005929.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 396, 418
AciI CCGC 3 cut(s) 394, 418, 551
AcuI CTGAAG 1 cut(s) 156
AcvI CACGTG 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 526
AflIII ACRYGT 3 cut(s) 351, 358, 381
AgsI TTSAA 2 cut(s) 69, 170
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 2 cut(s) 508, 514
AluI AGCT 2 cut(s) 508, 514
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 508, 511
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 517
BbrPI CACGTG 1 cut(s) 265
BbvI GCAGC 2 cut(s) 495, 523
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 509
BisI GCNGC 2 cut(s) 509, 512
BlsI GCNGC 2 cut(s) 510, 513
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 517
BsaAI YACGTR 2 cut(s) 265, 352
BsaBI GATNNNNATC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse8I GATNNNNATC 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 526
BseXI GCAGC 2 cut(s) 495, 523
Bsh1236I CGCG 2 cut(s) 396, 418
BshFI GGCC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 3 cut(s) 394, 418, 551
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 2 cut(s) 396, 418
BspHI TCATGA 1 cut(s) 566
BspMAI CTGCAG 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 277, 487, 525
Bst6I CTCTTC 1 cut(s) 38
BstBAI YACGTR 2 cut(s) 265, 352
BstC8I GCNNGC 2 cut(s) 270, 302
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 2 cut(s) 396, 418
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstNSI RCATGY 2 cut(s) 362, 385
BstSFI CTRYAG 1 cut(s) 509
BstUI CGCG 2 cut(s) 396, 418
BstV1I GCAGC 2 cut(s) 495, 523
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 270, 302
CciI TCATGA 1 cut(s) 566
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 517
CviAII CATG 7 cut(s) 254, 296, 359, 382, 404, 496, 567
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 7 cut(s) 257, 299, 362, 385, 407, 499, 570
FaqI GGGAC 1 cut(s) 347
FatI CATG 7 cut(s) 253, 295, 358, 381, 403, 495, 566
Fnu4HI GCNGC 2 cut(s) 509, 512
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 509, 512
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 509, 512
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 1 cut(s) 398
Hin1II CATG 7 cut(s) 257, 299, 362, 385, 407, 499, 570
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 4 cut(s) 170, 257, 312, 439
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 4 cut(s) 136, 194, 225, 317
Hpy188III TCNNGA 4 cut(s) 80, 104, 377, 567
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 3 cut(s) 277, 487, 525
HpyCH4IV ACGT 2 cut(s) 264, 351
HpyCH4V TGCA 4 cut(s) 268, 287, 304, 511
HpySE526I ACGT 2 cut(s) 264, 351
Hsp92II CATG 7 cut(s) 257, 299, 362, 385, 407, 499, 570
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 3 cut(s) 117, 163, 500
Lsp1109I GCAGC 2 cut(s) 495, 523
MaeII ACGT 2 cut(s) 264, 351
MaeIII GTNAC 4 cut(s) 6, 241, 354, 538
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 2 cut(s) 144, 544
MnlI CCTC 2 cut(s) 101, 317
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 2 cut(s) 508, 514
MvnI CGCG 2 cut(s) 396, 418
NcoI CCATGG 1 cut(s) 295
NdeII GATC 1 cut(s) 279
NlaIII CATG 7 cut(s) 257, 299, 362, 385, 407, 499, 570
NmuCI GTSAC 2 cut(s) 354, 538
NspI RCATGY 2 cut(s) 362, 385
OliI CACNNNNGTG 1 cut(s) 545
PagI TCATGA 1 cut(s) 566
PciI ACATGT 2 cut(s) 358, 381
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 170, 257, 312
PkrI GCNGC 2 cut(s) 510, 513
PleI GAGTC 1 cut(s) 447
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 1 cut(s) 447
Ppu21I YACGTR 2 cut(s) 265, 352
PscI ACATGT 2 cut(s) 358, 381
PspCI CACGTG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 513
PvuII CAGCTG 2 cut(s) 508, 514
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 509, 512
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 1 cut(s) 448
SetI ASST 4 cut(s) 267, 354, 510, 516
SfcI CTRYAG 1 cut(s) 509
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 545
SsiI CCGC 3 cut(s) 394, 418, 551
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 277, 487, 525
TaiI ACGT 2 cut(s) 267, 354
TaqI TCGA 1 cut(s) 81
TfiI GAWTC 3 cut(s) 170, 257, 312
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 2 cut(s) 354, 538
TseI GCWGC 2 cut(s) 508, 511
Tsp45I GTSAC 2 cut(s) 354, 538
TspDTI ATGAA 7 cut(s) 17, 25, 270, 377, 392, 484, 485
TspGWI ACGGA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 517
XceI RCATGY 2 cut(s) 362, 385
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.