Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030127

Physical Location & Seq

Genomic Coordinates Reverse (-)

14596732 .. 14597450

Gene Structure 719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCTCTGATCCCAATGCTCTGTACAAAGTGCTTGATAGTGTGAAAAATGCAGTCTTGCTTGTTTGTGATTTTGGGCGACTCAAGGCGGACCAGGGGTCGCTGGTGAAGGATGTCATTGTGCCTTATTCTCACCGGATTAATACTTATAATGGTGATATCAGTGTCGAAAATCGCAACACCTTGCTGTTCTTCATGGGCAATCGATTTCGCAAGGAGGGGGGAAAGATCCGAGATTTGCTTTTTCAGTTGCTTGAAAATGAAGAGGATGTCATAGTGAAACATGGAACCCAATCCAGGGAGAATCGACGGGCTGCTACACATGGGATGCATACGTCTAAGTTCTGTTTGAATCCTGCTGGTGATACTCCATCAGCTTGCCGGCTTTTTGACTCTATAGTTAGTTTGTGTGTCCCTGTGGTAATCAGTGATAGTATTGAGCTTCCATTTGAAGATGTTATAGACTACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010393 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0031221 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0035884 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0045491 GO:0045492 GO:0047517 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

157

Amino Acids

17.63

Weight (kDa)

6.07

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	11 - 157	9.3e-41	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030127)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0020371
rosa_samantha	Rh5CG160300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	5, 223
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	297, 298
AgsI	TTSAA	3 cut(s)	257, 352, 452
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	93, 296
AluBI	AGCT	2 cut(s)	377, 442
AluI	AGCT	2 cut(s)	377, 442
AlwI	GGATC	2 cut(s)	5, 223
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	4 cut(s)	118, 125, 167, 374
AvaII	GGWCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	2 cut(s)	95, 298
BfmI	CTRYAG	2 cut(s)	396, 466
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	95, 298
Bme18I	GGWCC	1 cut(s)	91
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	95, 298
BmsI	GCATC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	94, 297
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 298
Bse118I	RCCGGY	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	95, 298
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	94, 297
BseGI	GGATG	3 cut(s)	118, 274, 333
BseLI	CCNNNNNNNGG	2 cut(s)	297, 298
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	136, 382
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	297, 298
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	10, 228
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	289
BspPI	GGATC	2 cut(s)	5, 223
BsrFI	RCCGGY	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	94, 297
BssMI	GATC	2 cut(s)	10, 228
Bst2UI	CCWGG	2 cut(s)	95, 298
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	379, 383
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	118, 274, 333
BstKTI	GATC	2 cut(s)	13, 231
BstMBI	GATC	2 cut(s)	10, 228
BstNI	CCWGG	2 cut(s)	95, 298
BstSCI	CCNGG	2 cut(s)	93, 296
BstSFI	CTRYAG	2 cut(s)	396, 466
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	118, 274, 333
BtsIMutI	CAGTG	2 cut(s)	169, 433
Cac8I	GCNNGC	2 cut(s)	379, 383
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	196, 284, 323
CviJI	RGCY	5 cut(s)	5, 314, 377, 385, 442
CviKI_1	RGCY	5 cut(s)	5, 314, 377, 385, 442
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	12, 230
DpnII	GATC	2 cut(s)	10, 228
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	258
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	93, 296
EcoRV	GATATC	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	3 cut(s)	199, 287, 326
FaiI	YATR	8 cut(s)	150, 197, 275, 285, 324, 333, 398, 461
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	195, 283, 322
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	3 cut(s)	125, 281, 340
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	136, 382
Hin1II	CATG	3 cut(s)	199, 287, 326
HinfI	GANTC	4 cut(s)	81, 304, 352, 392
HpaII	CCGG	2 cut(s)	136, 382
HphI	GGTGA	4 cut(s)	118, 125, 167, 374
Hpy188I	TCNGA	2 cut(s)	10, 233
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	53, 331
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	199, 287, 326
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	10, 228
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	335
MalI	GATC	2 cut(s)	12, 230
MboI	GATC	2 cut(s)	10, 228
MboII	GAAGA	3 cut(s)	184, 275, 464
MflI	RGATCY	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	75, 386
MnlI	CCTC	3 cut(s)	16, 211, 259
Mph1103I	ATGCAT	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	381
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	136, 382
MspR9I	CCNGG	2 cut(s)	95, 298
MvaI	CCWGG	2 cut(s)	95, 298
NaeI	GCCGGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	10, 228
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	3 cut(s)	199, 287, 326
NlaIV	GGNNCC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	304, 352
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	2 cut(s)	75, 386
PpsI	GAGTC	2 cut(s)	75, 386
PshBI	ATTAAT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	93, 296
PspGI	CCWGG	2 cut(s)	93, 296
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	10, 228
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	75, 386
ScrFI	CCNGG	2 cut(s)	95, 298
SetI	ASST	5 cut(s)	185, 338, 379, 444, 473
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	2 cut(s)	396, 466
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	93, 296
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	3 cut(s)	168, 205, 307
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	304, 352
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	169, 433
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	184, 276
TspRI	CASTG	2 cut(s)	169, 433
VpaK11BI	GGWCC	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.