Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030179

Physical Location & Seq

Genomic Coordinates Reverse (-)

16919845 .. 16920907

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGATGCAATCAATGGCTCTGCAGACAAGAATGTATCTCAGGCGTGTCCTGTGGTTATGCGTCCAAGTAGTTCTTCTCCACAAGGGATTGGGAATTCCCGTTCTGACTTTTTTCCCGTTTGTCGTGGTTTGAGAGAGAGAGAGAGGACCCAAAAAGGAAAAAAGAAAAATCTGTCTTTGAGGGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000578 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009798 GO:0009880 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

63

Amino Acids

6.94

Weight (kDa)

10.52

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0022871 RchiOBHm_Chr6g0275611

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	149
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	50
CviJI	RGCY	1 cut(s)	18
CviKI_1	RGCY	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	94
FaiI	YATR	1 cut(s)	59
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FokI	GGATG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	8, 23
HpyF3I	CTNAG	1 cut(s)	39
LpnPI	CCDG	2 cut(s)	26, 63
MboII	GAAGA	1 cut(s)	66
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	2 cut(s)	138, 174
NlaIV	GGNNCC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	147
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	21
SgeI	CNNG	9 cut(s)	40, 53, 57, 62, 78, 95, 111, 128, 137
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	94
TasI	AATT	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.